Introduction

Poor reproducibility, the inability of reproducing, by using the original data, the original data analysis exactly, and replicability, the inability of reproducing, by new experiments, the original data approximately, have become major concerns in experimental biomedical science. So far reproducibility and replicability issues have been mostly addressed in different studies, making it difficult to prise apart their relative contributions to the quality of an experimental system in the wild {Iqbal:2016es}.

Determining the reproducibility of a study is relatively straightforward – one needs to ascertain that the original data analysis methods are described in sufficient detail and that the original data is obtainable in an analysable form.

Reproducibility of a study merely suggest that the data analysis of the original study was done, if not correctly, at least successfully by following the published plan. Reproducibility is a minimum requirement for soundness of a study, but does not guarantee it {Bollen:2015wf}.
Neither does a successful replication generate new evidence in favour or a scientific hypothesis {Goodman:2016bo}.

In contrast, a replication study generates new data by the original experimental procedures (although not necessarily the original data analytic methods). Replicability presupposes that we have access to a sufficiently detailed description of the experimental aspects of the study. Unlike a successful reproduction of a study, a successful replication introduces new evidence to science and thus essentially constitutes a form of meta-analysis, which has the potential to change the conclusions of the original study {Goodman:2016bo}. A successful replication is no guarantee for stability of conclusions – indeed, studies that give negative results individually can point to scientifically meaningful effects, when analysed together {Goodman:2016bo}. Moreover, even when presented with identical data there is room for reasonable disagreements about scientific conclusions among people with different interpretations of the scientific context of the problem {Maivali:2015wr}. There are two major hurdles in the replication business: the high cost of actually repeating experiments and a lack of consensus on how to measure replicability, which has led to the presentation of several potentially contradictory measures of replicability, even in the same paper (REF). This makes it desirable to first estimate in silico, which studies are worth replicating in the lab, and how to best replicate them.

To do this efficiently, we will concentrate on a single experimental system: differential expression profiling by RNA sequencing. RNA-seq has several advantages as a model system for studying experimental quality. It is currently a widely used and fast-growing system, suggesting that many new researchers adopt it every year 1. With a typical experiment costing in the range of … it consumes a great deal of public funding.

Nuleotide sequences and associated metadata is stored in three major public repositories – NCBI Sequence Read Archive (SRA), the European Bioinformatics Institute (EBI), and the DNA Database of Japan (DDBJ) that share data under International Nucleotide Sequence Database Collaboration (INSDC).

In contrast to INSDC, NCBI GEO functional genomics database also requires submission of a processed or summary data from which the conclusions in associated manuscripts are based. GEO arranges submission of the uploaded raw data files to SRA. Importantly, processed summary data allows the direct evaluation and reproduction of analysis.

RNA-seq is usually done in a massively parallel way, testing for differential expression between experiment and control conditions of thousands of RNA pairs. This allows to check the quality of each RNA-seq experiment by examining the distribution of the p values that were calculated by the original authors and were used by them to make inferences about differential expression of individual RNAs in their study (REF). Equally importantly, when these p values indicate a technically successful experiment, they can be further used to calculate the false discovery rate (FDR) and the stable retrospective power (SRP), which together enable to analyse the replication potential of the study (REF). This leads to a quality control procedure that works by sequential elimination and first discards the studies that do not describe their methods or deposit data, then the ones whose data (the p values) indicate serious problems with experimental design and/or data analysis, and finally the studies, whose low power suggests scientific irrelevance. Thus we aim to estimate the general quality of the RNA-seq field, determine the quality of individual studies, estimate the efficiency of potential replication studies, propose improvements in the design of these replication studies, and determine, which step of the RNA-seq process would have the greatest gains in terms of the overall health of the field, should improvements be targeted to it.

We believe that the health of a field of science can be best and cheapest gauged by a sequential elimination procedure: (1) estimating the fraction of reproducible publications in it, (2) actually reproducing its analyses, where possible, and checking for signs of failed experimental design and data analyses, (3) from the publications that by reproducibility criteria are worthy of replication attempts, estimating the statistical power of the experimental systems to provide reproducible results in replication studies, as well as the number of true effects left undiscovered in the original study that could be found in the replication study, (4) estimating the magnitude of changes to the experimental protocol (especially to sample size) that would allow high-powered replication studies.

Here we offer an integrated picture of the reproducibility and expected replicability of a modern and popular method of determining differential expression levels of RNAs, namely expression profiling by RNA sequencing.

We set out to assess following checklist for RNA-seq experiments submitted to Entrez GEO database.

  1. Reproducibility: is data usable for reanalysis? (deposition to a public database)
  2. Compliance with GEO database submission requirements?
  3. How many of the GEO submissions provide p value tables?
  4. P histograms – how many experiments are poorly designed/analysed?
  5. Replicability measures: SRP, nr of undiscovered effects, expected replication rate, required sample size for high power?

Materials and methods

Data query and import

Data was queried from NCBI GEO database by using eSearch E-Util with search string “expression profiling by high throughput sequencing[DataSet Type]” using entrezquery R package. GEO UIDs were extracted from query results with xml2 package v1.2.0 (Wickham, Hester, and Ooms 2018). UIDs were used to retrieve GEO document summaries using eSummary E-Util. Metadata was extracted from document summaries using xmlSApply function from XML package v3.98-1.17 (Temple Lang and CRAN Team 2019) and FTPLinks were used to identify supplemental files. We excluded from downloading supplemental files which contained pattern: ‘filelist’ ,‘annotation’ ,‘readme’ ,‘error’ in the file name and we also excluded files with following pattern ‘raw.tar’ ,‘csfasta’ ,‘bam’ ,‘sam’ ,‘bed’ ,‘[:punct:]hic’ ,‘hdf5’ ,‘bismark’ ,‘map’ ,‘barcode’ ,‘peaks’ ,‘tar’ ,‘gtf’ ,‘(big)?bed(.txt|12|graph|pk)?’ ,‘bw’ ,‘wig’ ,‘hic’ ,‘gct(x)?’ ,‘tdf’ ,‘gff(3)?’ ,‘pdf’ ,‘png’ ,‘zip’ ,‘sif’ ,‘narrowpeak’ ,‘fa(sta|stq)?’ ,‘r\(' ,'rda(ta)?\)’ in the file extension. Flat tables were imported into R using fread function from package data.table v1.12.0 (Dowle and Srinivasan 2019). MS Excel xls(x) files were imported using read_excel function from package readxl v1.2.0 (Wickham and Bryan 2018). Compressed xls(x) files were uncompressed before import using gzip. HT-seq experiment metadata was extracted from series matrix files. Supplementary files and series matrix files were downloaded using entrezquery package.

Data analysis

Exact binomial test was used to test differences in proportions. Proportion of true nulls was calculated using propTrueNull function from limma package v3.38.3 (???).

Code availability

Source code is available in github repo org/reponame.

Results

HT-sequencing expression data in GEO database

To assess the quality of high-throughput sequencing datasets we queried the NCBI GEO database for “expression profiling by high throughput sequencing”. Query retrieved 16427 datasets. GEO database shows exponentially growing number of HT-seq data set submissions between 2006 and 2017 (Fig. 1). First HT-seq data set was submitted to GEO database at 2006-09-08. We limited our query for datasets submitted up to the 2017-12-31 to reduce the number of recent incomplete submissions.

Approximately 68% of GEO data sets (11199) contain data from mouse or human origin (Fig. 1, left facet). The 87% (95%CI, 86.3% to 87.6%) of human and mouse data sets are linked to their primary publication. The proportion of datasets with publications is lower when other taxa are used as model organisms 78% (95%CI, 76.7% to 79.0%)(Fig. 1, right facet). As expected, the gap between published GEO series and published articles is bigger for more recent submissions.

For the human and mouse subset, we were able to identify supplementary files for 97% (13120) of GEO series.
The data sets lacking public supplementary files nevertheless show 83% publication rate (95%CI, 79.6% to 86.6%) which is similar to data sets with supplementary files.

Datasets submitted to NCBI GEO database featuring expression profiling by high-throughput sequencing. GEO series submission dynamics and associated publications of HT-seq data. Left facet, submissions featuring human or mouse data, N = 11199. Right facet, submissions of other taxa, N = 5228. Dashed line, GEO series with publications.

Figure 1: Datasets submitted to NCBI GEO database featuring expression profiling by high-throughput sequencing. GEO series submission dynamics and associated publications of HT-seq data. Left facet, submissions featuring human or mouse data, N = 11199. Right facet, submissions of other taxa, N = 5228. Dashed line, GEO series with publications.

Compliance with GEO database submission requirements and data usability for reanalysis

We sought to determine the compliance with the formal requirements for GEO data submission (https://www.ncbi.nlm.nih.gov/geo/info/seq.html). This pertains to the reproducibitly of data analysis. GEO archive has three required components: metadata, processed data, and raw data. Minimally these processed files are required to contain raw or normalized sequence read counts, or peak files of ChIP-Seq data. While, in the presence of raw data, supplementary data is not strictly neccessary for reproducibility, reproducing analysis from the raw data requires the reproduction of the full analysis, starting from re-aligning sequences to the genome, which can be practically unfeasible.

Supplementary HT-seq files uplodaded to NCBI GEO contain most commonly raw or processed sequence data files as a ‘RAW.tar’ archive and associated automatically generated ‘filelist.txt’ file (Fig. 2). ‘RAW.tar’ archive contains one file per sample and samples can be directly mapped to metadata by using sample name.

Filename extensions and common stubs of supplementary file names from HT-seq datasets submitted to NCBI GEO database. (A) File extensions of supplementary file names. (B) Common stubs of supplementary file names. Stubs were obtained by removing GEO id from supplementary file names and converting string to lower case. Stubs with N > 10 occurences are shown.

Figure 2: Filename extensions and common stubs of supplementary file names from HT-seq datasets submitted to NCBI GEO database. (A) File extensions of supplementary file names. (B) Common stubs of supplementary file names. Stubs were obtained by removing GEO id from supplementary file names and converting string to lower case. Stubs with N > 10 occurences are shown.

RAW.tar files are included in 59% (7727) of GEO series, whereas only RAW.tar and filelist.txt is present in 47% (6203) GEO series (Fig. 2 and 3).

Submission and publication of GEO series with only RAW.tar and filelist.txt supplementary files.

Figure 3: Submission and publication of GEO series with only RAW.tar and filelist.txt supplementary files.

Other common files contain annotations ‘readme.txt’ and processed data: commonly sequence read counts, gene expression analysis results or ChIP-Seq peak counts.

Sequence read counts can be either as raw read counts or normalised read counts. Gene expression analysis of HT-seq data is commonly performed by fitting models to discrete sequence read count data. Normalised sequence read counts are used for plotting and visual evaluation of the analysis results, but cannot be used to directly reproduce gene expression analysis.

However, tables containing top-ranked genes/features (toptables) from gene expression analysis with complete set of raw P values allow direct evaluation of the data and analysis quality underlying tested hypothesis.

Distribution of supplementary files per GEO Accession before and after filtering supplementary files for download. Left, all supplementary files. Right, supplementary files to be downloaded after filtering for tabular formats. Numbers show total number of files, respectively, before and after filtering.

Figure 4: Distribution of supplementary files per GEO Accession before and after filtering supplementary files for download. Left, all supplementary files. Right, supplementary files to be downloaded after filtering for tabular formats. Numbers show total number of files, respectively, before and after filtering.

GEO datasets contain most commonly one to two supplementary files per Accession and up to 269 files per Accession (Fig. 4). To reduce number of files to be downloaded from GEO database, based on file extensions and filenames, we excluded from the dataset files that most plausibly don’t contain final processed data in a tabular format, such as binary files, annotations, raw data, graphics, and other non tabular files. This filter reduced the number of files by 62% (Fig. 4) and GEO series by 53%. Resulting dataset consisted of 12776 files from 6178 GEO series to be downloaded.

Retention of HT-seq GEO series and supplementary files in filter for full sets of p values. Arrows from left to right, (1) GEO sets with supplementary files, (2) filter out RAW.tar and filelist.txt files from supplementary file names, (3) supplementary files with flat table formats that were downloaded, (4) tables with p values. Number of p value sets is the number of sets with >1000 features.

Figure 5: Retention of HT-seq GEO series and supplementary files in filter for full sets of p values. Arrows from left to right, (1) GEO sets with supplementary files, (2) filter out RAW.tar and filelist.txt files from supplementary file names, (3) supplementary files with flat table formats that were downloaded, (4) tables with p values. Number of p value sets is the number of sets with >1000 features.

Processed data

Global view on number of samples and features of HT-seq experiments. (A) Number of features in GEO series where supplementary file with p values was uploaded (dark grey) compared to all GEO series with supplementary files (light grey). (B) Number of samples in GEO series where p values were available (dark grey) compared to all series with supplementary files (light grey). (C) Mean number of samples was 27 and median 8. Most frequent sample size was 6. Mean number of features was 62096 and median 21120.5. Number of samples was taken from series matrix files and number of features is number of rows in supplementary files. Dashed line denotes cutoff for complete sets of features/p values.

Figure 6: Global view on number of samples and features of HT-seq experiments. (A) Number of features in GEO series where supplementary file with p values was uploaded (dark grey) compared to all GEO series with supplementary files (light grey). (B) Number of samples in GEO series where p values were available (dark grey) compared to all series with supplementary files (light grey). (C) Mean number of samples was 27 and median 8. Most frequent sample size was 6. Mean number of features was 62096 and median 21120.5. Number of samples was taken from series matrix files and number of features is number of rows in supplementary files. Dashed line denotes cutoff for complete sets of features/p values.

Proportion of true null hypotheses in P value sets. (A) Distribution of estimated \(\pi0\) values in reported GEO HT-seq P value sets. (B) Distribution of \(\pi0\) versus number of features. Blue line, loess fit. P value sets with >1000 features are shown.

Figure 7: Proportion of true null hypotheses in P value sets. (A) Distribution of estimated \(\pi0\) values in reported GEO HT-seq P value sets. (B) Distribution of \(\pi0\) versus number of features. Blue line, loess fit. P value sets with >1000 features are shown.

Journals publishing HT-seq data. (A) Top 20 journals publishing non-human or -mouse datasets. (B) Top 20 journals publishing human or mouse datasets. (C) Top 10 journals publishing articles reporting P values in GEO supplementary files.

Figure 8: Journals publishing HT-seq data. (A) Top 20 journals publishing non-human or -mouse datasets. (B) Top 20 journals publishing human or mouse datasets. (C) Top 10 journals publishing articles reporting P values in GEO supplementary files.

Citation of articles featuring HT-seq data. (A) Distribution of the number of citations in P value sets displaying anti-conservative histogram compared to other histogram types. (B) Relationship between the proportion of true nulls and number of citations. Blue line, linear model fit. Citation data is from Scopus database.

Figure 9: Citation of articles featuring HT-seq data. (A) Distribution of the number of citations in P value sets displaying anti-conservative histogram compared to other histogram types. (B) Relationship between the proportion of true nulls and number of citations. Blue line, linear model fit. Citation data is from Scopus database.

Phylogenetic tree of P value histograms. Tree was obtained by clustering of the empirical cumulative distribution function outputs of P value histograms. Colors show groups obtained by cutting the tree at the height giving six clusters.

Figure 10: Phylogenetic tree of P value histograms. Tree was obtained by clustering of the empirical cumulative distribution function outputs of P value histograms. Colors show groups obtained by cutting the tree at the height giving six clusters.

Sample size in HT-seq GEO series. Experimental groups were inferred from GEO series matrix files and mean samples size was calculated from experimental group sizes.

Figure 11: Sample size in HT-seq GEO series. Experimental groups were inferred from GEO series matrix files and mean samples size was calculated from experimental group sizes.

Proportion of true nulls versus sample size. Proportion of true nulls was calculated for anti-conservative P value sets.

Figure 12: Proportion of true nulls versus sample size. Proportion of true nulls was calculated for anti-conservative P value sets.

Table 1: Summary of histogram types in supplementary files of GEO HT-seq submissions.
Type n %
anti-conservative 468 30.0%
bimodal 300 19.3%
conservative 670 43.0%
other 56 3.6%
spiky 57 3.7%
uniform 7 0.4%
Table 2: Histogram types after filtering out non-informative features.
Type n %
anti-conservative 173 79.4%
other 37 17.0%
spiky 6 2.8%
uniform 2 0.9%
Table 3: Proportion of histograms that could be fixed by filtering out non-informative features.
Type conversion n %
improvement 56 25.7%
no improvement 31 14.2%
same bad 14 6.4%
same good 117 53.7%
Table 4: P value histograms and proportion of true nulls. Histograms are colored according to clustering oftheir empirical cumulative distribution function outputs. Supplementary file names for tables from xls(x) files might be appended with sheet name. This table contains 1558 unique P value histograms from 729 GEO Accessions. pi0 was calculated using limma::propTrueNull() function.
Accession Supplementary file name (with p-value set id) Histogram Type pi0 Histogram after filter Type after filter pi0 after filter Annot Organism Taxid Organism2 Taxid2
GSE94840 GSE94840_Alox5_vs_Control.all.gene.result.txt.gz other NA other NA GPL17021 Mus musculus 10090 NA NA
GSE83664 GSE83664_NS_M_vs_Input.isoform_exp.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE90974 GSE90974_Cuffdiff_Transcript_Sb_36v48.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE89364 GSE89364_mav_RNASeq_exp_deqiangs.xlsx conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE72712 GSE72712_ESCd_gt70_over_ESCd_40-70.cuffdiff.xlsx-sheet-EST-d_gt70_over_EST-d_40-70 conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE77303 GSE77303_gene_exp.diff.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE73678 GSE73678_Differential_gene_expression.xlsx.gz conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE66652 GSE66652_AS13-C_differential_expression.txt.gz bimodal NA NA NA NA GPL19862 Rhizoctonia solani AG-3 Rhs1AP 1086054 NA NA
GSE63748 GSE63748_exp_7d4h_diff.txt.gz conservative NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE50156 GSE50156_nmt1-hsf1_MMThi-_AND_WT_MMThi-.txt.gz conservative NA NA NA NA GPL13988 Schizosaccharomyces pombe 4896 NA NA
GSE94587 GSE94587_DESEQ_Female_WT_vs_Female_del.txt.gz bimodal NA anti-conservative 0.83 GPL11154 Homo sapiens 9606 NA NA
GSE83664 GSE83664_NS_vs_Input.isoform_exp.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE90974 GSE90974_Cuffdiff_Transcript_SbvSv_24.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE77471 GSE77471_RNASEQ_differential_expression.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE72712 GSE72712_ESCd_gt70_over_ESCd_lt40.cuffdiff.xlsx-sheet-EST-d_gt70_over_EST-d_lt40 conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE70382 GSE70382_DESeq_allresp_vs_nonresp.xlsx-sheet-Blad1 conservative NA uniform NA GPL20640 Anguilla anguilla 7936 NA NA
GSE61566 GSE61566_isoform_exp.diff.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE61733 GSE61733_gene_exp.diff.gz conservative NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE50156 GSE50156_ssa2D_AND_WT_24oC.txt.gz conservative NA NA NA NA GPL13988 Schizosaccharomyces pombe 4896 NA NA
GSE99397 GSE99397_CreNeg-MHCPos_vs_Control.CuffDiff.gene_exp.diff.gz conservative NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE94587 GSE94587_DESEQ_Male_WT_vs_Female_WT.txt.gz bimodal NA anti-conservative 0.60 GPL11154 Homo sapiens 9606 NA NA
GSE90974 GSE90974_Cuffdiff_Transcript_SbvSv_36.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE72712 GSE72712_ESCd_gt70_over_ESCu.cuffdiff.xlsx-sheet-EST-d_gt70_over_EST-u.cuffdiff conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE64687 GSE64687_FPKM_and_differential_expression_for_mRNA.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE66652 GSE66652_S4-C_differential_expression.txt.gz bimodal NA NA NA NA GPL19862 Rhizoctonia solani AG-3 Rhs1AP 1086054 NA NA
GSE61690 GSE61690_DormantvsNondormant_meristems.txt.gz bimodal NA NA NA NA GPL13899 Solanum tuberosum 4113 NA NA
GSE99397 GSE99397_CreNeg-MHCPos_vs_CrePos-MHCNeg.CuffDiff.gene_exp.diff.gz conservative NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE94587 GSE94587_DESEQ_Male_WT_vs_Male_del.txt.gz bimodal NA anti-conservative 0.80 GPL11154 Homo sapiens 9606 NA NA
GSE90974 GSE90974_Cuffdiff_Transcript_SbvSv_48.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE72806 GSE72806_CUFFDIFF_CONTROL_vs_HEAT_gene_exp.diff.gz bimodal NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE81522 GSE81522_N2_vs_ok600_gene_differential_expression_testing.txt.gz conservative NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE84450 GSE84450_WT_UTvsKO_DTT_gene_exp.diff.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE72712 GSE72712_ESCd_lt40_over_ESCu.cuffdiff.xlsx-sheet-EST-d_lt40_over_EST-u.cuffdiff conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE29992 GSE29992_Het1_KO2_expr.txt.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE99397 GSE99397_CrePos-MHCNeg_vs_Control.CuffDiff.gene_exp.diff.gz conservative NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE87626 GSE87626_nc_vs_19_gene_exp.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE90974 GSE90974_Cuffdiff_Transcript_SbvSv_Global.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE75614 GSE75614_processed_data_mrna-seq_differential_expression.xlsx conservative NA NA NA NA GPL21196 Tachysurus vachellii 175792 NA NA
GSE72806 GSE72806_CUFFDIFF_CONTROL_vs_SALT_HEAT_gene_exp.diff.gz bimodal NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE84450 GSE84450_WT_UTvsKO_UT_gene_exp.diff.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE75787 GSE75787_gene_exp.diff.txt.gz bimodal NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE66445 GSE66445_M._a.-pES1-MATmcr3_methane_vs._M.a.-pES1-MATmcr3_methanol_GEO_Processed_data.xlsx-sheet-Sheet1 conservative NA NA NA NA GPL19842 Methanosarcina acetivorans 2214 NA NA
GSE63707 GSE63707_DEXSeqResults_IFMWT_03d_vs_jump_0d.txt.gz bimodal NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE61566 GSE61566_promoters.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE85416 GSE85416_isoform_exp.diff.gz conservative NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE90974 GSE90974_Cuffdiff_Transcript_Sv_24v36.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE73321 GSE73321_FW_VS_BW_expression_diff.txt.gz other NA NA NA NA GPL20940 Plecoglossus altivelis 61084 NA NA
GSE74886 GSE74886_processedFPKMS.xlsx bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE72806 GSE72806_CUFFDIFF_CONTROL_vs_SALT_gene_exp.diff.gz conservative NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE84450 GSE84450_WT_UTvsWT_DTT_gene_exp.diff.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE68229 GSE68229_gene_exp.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE64840 GSE64840_2N_Ts65Dn_MEFs.gene_exp.diff.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE63707 GSE63707_DEXSeqResults_IFMWT_03d_vs_leg_0d.txt.gz bimodal NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE61566 GSE61566_splicing.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE54602 GSE54602_D4_D8_D11_D14_isoform_exp.diff.parsed.txt.gz-set-0 bimodal NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE54602 GSE54602_D4_D8_D11_D14_isoform_exp.diff.parsed.txt.gz-set-1 conservative NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE54602 GSE54602_D4_D8_D11_D14_isoform_exp.diff.parsed.txt.gz-set-2 conservative NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE43431 GSE43431_mRNA_STHdh_CUFF_gene_exp.diff.txt.gz bimodal NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE90974 GSE90974_Cuffdiff_Transcript_Sv_24v48.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE87315 GSE87315_CuffDiff_RNA-seq.csv.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE84249 GSE84249_cuffdiff_gene_differential_expression_testing.tab.gz conservative NA NA NA NA GPL14844 Rattus norvegicus 10116 NA NA
GSE84450 GSE84450_WT_UTvsWT_DTT_splicing.diff.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE68229 GSE68229_isoform_exp.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE70584 GSE70584_Liberman2015_Wholeroot_CUFFLINKS_gene_exp.txt.gz conservative NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE67954 GSE67954_CSR1_RNAi_DESeq_output.txt.gz bimodal NA other NA GPL18245 Caenorhabditis elegans 6239 NA NA
GSE63091 GSE63091_diffana_DESeq_GFP-4A3-Y14_MLN51-UPF1.Ensembl65.tsv.gz-set-0 conservative NA anti-conservative 0.94 GPL11154 Homo sapiens 9606 NA NA
GSE63091 GSE63091_diffana_DESeq_GFP-4A3-Y14_MLN51-UPF1.Ensembl65.tsv.gz-set-1 conservative NA anti-conservative 0.99 GPL11154 Homo sapiens 9606 NA NA
GSE63091 GSE63091_diffana_DESeq_GFP-4A3-Y14_MLN51-UPF1.Ensembl65.tsv.gz-set-2 conservative NA other NA GPL11154 Homo sapiens 9606 NA NA
GSE63091 GSE63091_diffana_DESeq_GFP-4A3-Y14_MLN51-UPF1.Ensembl65.tsv.gz-set-3 conservative NA other NA GPL11154 Homo sapiens 9606 NA NA
GSE61566 GSE61566_tss_group_exp.diff.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE97395 GSE97395_Treat_vs_control_diff.txt.gz spiky NA anti-conservative 0.60 GPL16791 Homo sapiens 9606 NA NA
GSE90974 GSE90974_Cuffdiff_Transcript_Sv_36v48.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE84450 GSE84450_WT_UTvsX_DTT_gene_exp.diff.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE73289 GSE73289_gene_exp.diff.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE67954 GSE67954_P_granule_RNAi_DESeq_output.txt.gz conservative NA other NA GPL18245 Caenorhabditis elegans 6239 NA NA
GSE48230 GSE48230_PC3-EMT14-OVOL1_v_PC3-EMT14-OVOL2_gene_exp.diff.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE42443 GSE42443_Brg1cKO_gene_exp.diff.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE85565 GSE85565_Result_Table.csv.gz spiky NA anti-conservative 0.55 GPL16791 Homo sapiens 9606 NA NA
GSE90974 GSE90974_Cuffdiff_Transcript_SvvRv_24.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE84450 GSE84450_WT_UTvsX_UT_gene_exp.diff.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE81858 GSE81858_AA_ABBB_gene_exp.diff.gz conservative NA NA NA NA GPL21941 Equus caballus 9796 NA NA
GSE70584 GSE70584_Liberman2015_sorted_CUFFLINKS_gene_exp.txt.gz bimodal NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE48230 GSE48230_PC3-EMT14-OVOL1_v_PC3-EMT14-OVOL2_isoform_exp.diff.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE90974 GSE90974_Cuffdiff_Transcript_SvvRv_36.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE76304 GSE76304_gene_exp.diff.gz bimodal NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE70668 GSE70668_DD_gene_exp.diff.csv.gz conservative NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE56013 GSE56013_A.Wildtype_wholefly_DCVrel.Mock.txt.gz conservative NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE48230 GSE48230_PC3-EMT14_v_PC3-EMT14-OVOL1_gene_exp.diff.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE90974 GSE90974_Cuffdiff_Transcript_SvvRv_48.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE64025 GSE64025_gene_exp.diff.gz conservative NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE68470 GSE68470_xue_etal_edgeR.txt.gz bimodal NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE58053 GSE58053_1mm-over-0mm.txt.gz bimodal NA NA NA NA GPL18739 Nitrobacter winogradskyi 913 NA NA
GSE56013 GSE56013_B.G9amutant_wholefly_DCVrel.Mock.txt.gz conservative NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE49716 GSE49716_pei1vspei3_gene_exp.diff.txt.gz conservative NA NA NA NA GPL15520 Homo sapiens 9606 NA NA
GSE49700 GSE49700_FB_FLM.RNA.txt.gz other NA NA NA NA GPL17552 Tuber melanosporum 39416 NA NA
GSE48230 GSE48230_PC3-EMT14_v_PC3-EMT14-OVOL1_isoform_exp.diff.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE81437 GSE81437_polyA_differential_gene_expression.txt.gz conservative NA NA NA NA GPL14844 Rattus norvegicus 10116 NA NA
GSE86442 GSE86442_gene_differential_expression.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE90974 GSE90974_Cuffdiff_Transcript_SvvRv_Global.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE81493 GSE81493_Differential_gene_expression_analysis.diff.gz bimodal NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE56013 GSE56013_E.Wildtype_fatbody_DCVrel.Mock.txt.gz conservative NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE48230 GSE48230_PC3-EMT14_v_PC3-EMT14-OVOL2_gene_exp.diff.txt.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE36710 GSE36710_RBFOX1_Splicing_Events.txt.gz conservative NA NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE95679 GSE95679_Mishima_2017_Dcp2.txt.gz conservative NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE56013 GSE56013_F.G9amutant_fatbody_DCVrel.Mock.txt.gz conservative NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE48230 GSE48230_PC3-EMT14_v_PC3-EMT14-OVOL2_isoform_exp.diff.txt.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE35616 GSE35616_DESeq.txt.gz spiky NA anti-conservative 0.87 GPL13112 Mus musculus 10090 NA NA
GSE36710 GSE36710_RBFOX1_Transcriptional_Events.txt.gz bimodal NA anti-conservative 1.00 GPL9115 Homo sapiens 9606 NA NA
GSE87862 GSE87862_gene_exp.diff.gz conservative NA NA NA NA GPL21103 Mus musculus 10090 NA NA
GSE94120 GSE94120_K562pos_rel_abundance_1x1.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE83717 GSE83717_FPKMs_pvalue_matrices.txt.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE85442 GSE85442_cuffdiff.gene_exp_diff.allg.txt.gz conservative NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE74220 GSE74220_Expression_of_Protein_Coding_Genes_in_Control_and_IL1b_treated_human_chondrocytes.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE65697 GSE65697_RNA-seq.csv.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE56013 GSE56013_I.G9amutant_rel.to_Wildtype_DCV_WholeFly.txt.gz spiky NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE63300 GSE63300_gene_exp.diff.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE58082 GSE58082_gene_exp.diff.txt.gz bimodal NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE49700 GSE49700_aza.repeats.txt.gz conservative NA NA NA NA GPL17552 Tuber melanosporum 39416 NA NA
GSE49313 GSE49313_DRRi_GFPi_cds_exp.diff.txt.gz conservative NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE49313 GSE49313_DRRi_GFPi_cds_exp.diff.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE48230 GSE48230_PC3-EMT14_v_PC3-Epi_gene_exp.diff.txt.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE94120 GSE94120_SKNSHpos_rel_abundance_1x1.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE64641 GSE64641_leaf_gene_exp.diff.txt.gz conservative NA NA NA NA GPL15463 Zea mays 4577 NA NA
GSE85442 GSE85442_cuffdiff.isoform_exp.diff.txt.gz conservative NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE77902 GSE77902_WM1976_siRNA1_vs_control.deseq.txt.gz conservative NA anti-conservative 0.78 GPL18573 Homo sapiens 9606 NA NA
GSE56013 GSE56013_J.G9amutant_rel.to_Wildtype_DCV_Fatbody.txt.gz conservative NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE59850 GSE59850_redgrn_early_cuffdiff_out.diff.txt.gz bimodal NA NA NA NA GPL19005 Gallus gallus 9031 NA NA
GSE49700 GSE49700_aza.txt.gz other NA NA NA NA GPL17552 Tuber melanosporum 39416 NA NA
GSE49313 GSE49313_PhanDRR1.2_PhanGFP_cds_exp.diff.txt.gz conservative NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE49313 GSE49313_PhanDRR1.2_PhanGFP_cds_exp.diff.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE48230 GSE48230_PC3-EMT14_v_PC3-Epi_isoform_exp.diff.txt.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE47399 GSE47399_diff_exp_gene_exp.diff.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE98869 GSE98869_diffexp.tsv.gz spiky NA other NA GPL19757 Caenorhabditis elegans 6239 NA NA
GSE75640 GSE75640_HR1_vs_control_1_gene_exp.diff.gz bimodal NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE94843 GSE94843_cuffdiff_mock_vs_lox.txt.gz conservative NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE94120 GSE94120_U2OS-PcTF_rel_abundance_1x3.txt.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE64641 GSE64641_seedling_gene_exp.diff.txt.gz conservative NA NA NA NA GPL15463 Zea mays 4577 NA NA
GSE85442 GSE85442_cuffdiff.tss_group_exp.diff.txt.gz conservative NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE77901 GSE77901_SLNCR1_vs_vector.deseq.txt.gz conservative NA anti-conservative 0.65 GPL18573 Homo sapiens 9606 NA NA
GSE70806 GSE70806_rf6a_matrix.txt.gz conservative NA NA NA NA GPL14954 Macaca mulatta 9544 NA NA
GSE68360 GSE68360_cds.diff.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE50554 GSE50554_Routine_gene.diff.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE75640 GSE75640_HR2_vs_control_2_gene_exp.diff.gz conservative NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE81707 GSE81707_N2_HC125_RNA-seq_PairedEnd_gene_exp_diff.xlsx conservative NA NA NA NA GPL19757 Caenorhabditis elegans 6239 NA NA
GSE94843 GSE94843_cuffdiff_mock_vs_mnv.txt.gz conservative NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE94120 GSE94120_U2OSpos_rel_abundance_1x1.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE85863 GSE85863_Galaxy238-_Cuffdiff_on_data_40__data_35_and_others_gene_differential_expression_testing.txt.gz conservative NA NA NA NA GPL16479 Drosophila melanogaster 7227 NA NA
GSE77901 GSE77901_SLNCR1cons_vs_vector.deseq.txt.gz conservative NA anti-conservative 0.92 GPL18573 Homo sapiens 9606 NA NA
GSE80128 GSE80128_P035_DESeq_KO-WT_pathway.txt.gz bimodal NA anti-conservative 0.80 GPL13112 Mus musculus 10090 NA NA
GSE76125 GSE76125_SenesUntreated_vs_SenesTreated_gene_exp.diff.gz conservative NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE68360 GSE68360_cds_exp.diff.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE47083 GSE47083_WTvsSclKO_WTvsGata12KO.xlsx.gz-set-0 conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE47083 GSE47083_WTvsSclKO_WTvsGata12KO.xlsx.gz-set-1 conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE61845 GSE61845_gene_exp.diff.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE59850 GSE59850_redgrn_late_cuffdiff_out.diff.txt.gz bimodal NA NA NA NA GPL19005 Gallus gallus 9031 NA NA
GSE52502 GSE52502_gene_exp.diff.gz conservative NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE50554 GSE50554_Routine_isoform.diff.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE44333 GSE44333_d33_mock_vs_mhv_res_noNA.txt.gz bimodal NA anti-conservative 0.96 GPL9250 Mus musculus 10090 NA NA
GSE93748 GSE93748_shTAZ_in_DU145_proceeded_data.xlsx spiky NA anti-conservative 0.91 GPL16791 Homo sapiens 9606 NA NA
GSE81707 GSE81707_N2_HC125_RNA-seq_SingleEnd_gene_exp_diff.xlsx conservative NA NA NA NA GPL19757 Caenorhabditis elegans 6239 NA NA
GSE94821 GSE94821_cuffdiff_mock_vs_12hpi.txt.gz conservative NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE77422 GSE77422_H358_Control-GNF5.xlsx-sheet-Sheet1 conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE67001 GSE67001_gene_exp.diff.gz conservative NA NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE77901 GSE77901_SLNCR1deltacons_vs_vector.deseq.txt.gz bimodal NA anti-conservative 0.57 GPL18573 Homo sapiens 9606 NA NA
GSE70314 GSE70314_Gal474_cuffdiff_sictrl.1_siAtad2.1_gene_differential_expression_testing.txt.gz bimodal NA NA NA NA GPL15103 Mus musculus 10090 NA NA
GSE68360 GSE68360_gene_exp.diff.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE61796 GSE61796_NG_Induced_transcript_changes.txt.gz conservative NA NA NA NA GPL13899 Solanum tuberosum 4113 NA NA
GSE50554 GSE50554_Stringent_gene.diff.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE49389 GSE49389_RNAseq_gene_exp.txt.gz conservative NA NA NA NA GPL14844 Rattus norvegicus 10116 NA NA
GSE93339 GSE93339_e125_Yap-mt_lung_all_genes.txt.gz conservative NA NA NA NA GPL21103 Mus musculus 10090 NA NA
GSE85385 GSE85385_RNA-seq_Mouse_Cell_Lines.xlsx-sheet-H3WT_EPZ_x_K27M_EPZ other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE94821 GSE94821_cuffdiff_mock_vs_16hpi.txt.gz conservative NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE77422 GSE77422_PC9M_Control-GNF5.xlsx conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE77693 GSE77693_deseq.comparison.csv.gz spiky NA anti-conservative 1.00 GPL17021 Mus musculus 10090 NA NA
GSE68360 GSE68360_isoform_exp.diff.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE59850 GSE59850_redrho_late_cuffdiff_out.diff.txt.gz bimodal NA NA NA NA GPL19005 Gallus gallus 9031 NA NA
GSE50554 GSE50554_Stringent_isoform.diff.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE94821 GSE94821_cuffdiff_mock_vs_20hpi.txt.gz conservative NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE77422 GSE77422_PC9M_SCR-AA.xlsx conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE75332 GSE75332_Ad_AGGF1vsAd_NC.Differential_analysis_results.txt.gz other NA NA NA NA GPL9185 Mus musculus 10090 NA NA
GSE74893 GSE74893_ctrl_and_Tsc1ckO_gene_exp.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE70314 GSE70314_Gal476_cuffdiff_sictrl.1_siAtad2.1_transcript_differential_expression_testing.txt.gz bimodal NA NA NA NA GPL15103 Mus musculus 10090 NA NA
GSE74196 GSE74196_SnapC_gene_exp.diff.gz conservative NA NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE68360 GSE68360_promoters.diff.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE54240 GSE54240_phoP_RNA-seq.tsv.gz bimodal NA NA NA NA GPL17280 Mycobacterium tuberculosis H37Rv 83332 NA NA
GSE94821 GSE94821_cuffdiff_mock_vs_4hpi.txt.gz conservative NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE77422 GSE77422_PC9_Control-GNF5.xlsx conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE81593 GSE81593_1.Mcf10A_p53delVec_and_p53delHras.xlsx bimodal NA anti-conservative 0.36 GPL11154 Homo sapiens 9606 NA NA
GSE70833 GSE70833_Rennoll_et_al_processed_data.xlsx-sheet-Cuffdiff conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE68360 GSE68360_splicing.diff.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE63133 GSE63133_D.rerio_SVCV_infected__24K__vs_control_0K.txt.gz conservative NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE56052 GSE56052_gene_exp.diff.gz conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE59850 GSE59850_redvio_late_cuffdiff_out.diff.txt.gz bimodal NA NA NA NA GPL19005 Gallus gallus 9031 NA NA
GSE57682 GSE57682_Id2_3_Treg_G42_Cuffdiff.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE57682 GSE57682_Id2_3_Treg_G42_Cuffdiff.txt.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE89572 GSE89572_24h_DEGs.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE88970 GSE88970_Whsc1_proB_DE.xlsx-sheet-4P_05_WT_vs_KO_results spiky NA anti-conservative 0.88 GPL13112 Mus musculus 10090 NA NA
GSE94821 GSE94821_cuffdiff_mock_vs_8hpi.txt.gz conservative NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE77422 GSE77422_PC9_SCR-AA.xlsx conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE81593 GSE81593_2.Mcf10A_Vec_and_Hras.xlsx bimodal NA anti-conservative 0.63 GPL11154 Homo sapiens 9606 NA NA
GSE83827 GSE83827_WT_vs_tf5.xlsx-sheet-gene_exp_diff bimodal NA NA NA NA GPL17342 Saccharomyces cerevisiae 4932 NA NA
GSE70314 GSE70314_Gal485_cuffdiff_sictrl.2_siAtad2.2_gene_differential_expression_testing.txt.gz bimodal NA NA NA NA GPL15103 Mus musculus 10090 NA NA
GSE60630 GSE60630_PDC3_vs_DMSO_gene_exp.diff.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE56073 GSE56073_PARP-1-KD_tss_group_exp.diff.gz conservative NA NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE71295 GSE71295_gene_exp.diff.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE63836 GSE63836_Dx_versus_C15Dx.DESeq.txt.gz bimodal NA anti-conservative 0.83 GPL17021 Mus musculus 10090 NA NA
GSE62668 GSE62668_Embryo.txt.gz conservative NA NA NA NA GPL16479 Drosophila melanogaster 7227 NA NA
GSE63133 GSE63133_D.rerio_SVCV_infected__24S__vs_control_0S.txt.gz conservative NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE59980 GSE59980_RNA-seq_598-SKD.txt.gz-set-0 spiky NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE43660 GSE43660_control_vs_IL4_1hr.txt.gz bimodal NA NA NA NA GPL9185 Mus musculus 10090 NA NA
GSE36695 GSE36695_H1H9KSR_SFM.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE36695 GSE36695_H1H9KSR_SFM.txt.gz conservative NA NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE89572 GSE89572_2h_DEGs.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE71133 GSE71133_Supplementary_Table_2.xlsx-sheet-FC > 0 uniform NA other NA GPL17021 Mus musculus 10090 NA NA
GSE71133 GSE71133_Supplementary_Table_2.xlsx-sheet-FC < 0 uniform NA other NA GPL17021 Mus musculus 10090 NA NA
GSE60630 GSE60630_PDC3_vs_DMSO_isoform_exp.diff.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE56073 GSE56073_PARylation_tss_group_exp.diff.gz conservative NA NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE59621 GSE59621_gene_exp.diff.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE62668 GSE62668_Sperm.txt.gz conservative NA NA NA NA GPL16479 Drosophila melanogaster 7227 NA NA
GSE63133 GSE63133_D.rerio_SVCV_infected__6K__vs_control_0K.txt.gz conservative NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE60171 GSE60171_cuffdiff.FGF-1day.vs.iBET-1day.txt.gz conservative NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE60171 GSE60171_cuffdiff.FGF-1day.vs.iBET-1day.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE59850 GSE59850_rhogrn_early_cuffdiff_out.diff.txt.gz conservative NA NA NA NA GPL19005 Gallus gallus 9031 NA NA
GSE50739 GSE50739_gene_exp.diff.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE43660 GSE43660_control_vs_IL4_4hr.txt.gz bimodal NA NA NA NA GPL9185 Mus musculus 10090 NA NA
GSE36695 GSE36695_H1H9KSR_hfSFM.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE36695 GSE36695_H1H9KSR_hfSFM.txt.gz conservative NA NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE89572 GSE89572_7d_DEGs.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE98526 GSE98526_A2_vs_UA159T5.txt.gz other NA NA NA NA GPL23431 Streptococcus mutans UA159 210007 NA NA
GSE94783 GSE94783_rnaseq_process_cuffdiff_global_DMSO_Flut_PPC_genes_diff.tsv.gz conservative NA NA NA NA GPL21290 Homo sapiens 9606 NA NA
GSE70314 GSE70314_Gal487_cuffdiff_sictrl.2_siAtad2.2_transcript_differential_expression_testing.txt.gz bimodal NA NA NA NA GPL15103 Mus musculus 10090 NA NA
GSE60630 GSE60630_PDC3_vs_DMSO_splicing.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE67029 GSE67029_cuffdiff_mh_h8.txt.gz bimodal NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE63133 GSE63133_D.rerio_SVCV_infected__6S__vs_control_0S.txt.gz conservative NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE53470 GSE53470_gene_exp_P251_PCJ_3rep_combined.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE60171 GSE60171_cuffdiff.FGF-5days.vs.iBET-5days.txt.gz conservative NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE60171 GSE60171_cuffdiff.FGF-5days.vs.iBET-5days.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE43660 GSE43660_control_vs_il33_1hr.txt.gz bimodal NA NA NA NA GPL9185 Mus musculus 10090 NA NA
GSE36695 GSE36695_H1KSR_H1SFM.txt.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE36695 GSE36695_H1KSR_H1SFM.txt.gz bimodal NA NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE94783 GSE94783_rnaseq_process_cuffdiff_global_DMSO_Flut_genes_diff.tsv.gz conservative NA NA NA NA GPL21290 Homo sapiens 9606 NA NA
GSE71159 GSE71159_E3KO_vs_EfCtrl_gene_exp.diff.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE73893 GSE73893_Results_DEXseq.txt.gz uniform NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE54473 GSE54473_Suv420_gene_exp.xlsx.gz-sheet-gene_exp bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE54473 GSE54473_Suv420_gene_exp.xlsx.gz-sheet-gene_exp bimodal NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE53470 GSE53470_gene_exp_P251_PJD_3rep_combined.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE54286 GSE54286_Lys_sup_pelle_rs_mvhip_Exp.txt.gz bimodal NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE43660 GSE43660_control_vs_il33_4hr.txt.gz bimodal NA NA NA NA GPL9185 Mus musculus 10090 NA NA
GSE36695 GSE36695_H1SFM_H9SFM.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE36695 GSE36695_H1SFM_H9SFM.txt.gz conservative NA NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE94783 GSE94783_rnaseq_process_cuffdiff_global_DMSO_PPC_genes_diff.tsv.gz conservative NA NA NA NA GPL21290 Homo sapiens 9606 NA NA
GSE71159 GSE71159_ECtrl_vs_E3KO_gene_exp.diff.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE58115 GSE58115_4858DM98-3_VS_4858C6_differential_all.txt.gz bimodal NA NA NA NA GPL18744 Streptomyces hygroscopicus subsp. jinggangensis 5008 1133850 NA NA
GSE36695 GSE36695_H1SFM_hfSFM.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE36695 GSE36695_H1SFM_hfSFM.txt.gz conservative NA NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE35178 GSE35178_gene_exp.diff.gz conservative NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE79724 GSE79724_DEseq_LG3-LG6-LG9_LG2-LG5-LG8_DEG_list.csv.gz conservative NA other NA GPL11154 Homo sapiens 9606 NA NA
GSE89504 GSE89504_TSS_groups_exp.tabular.txt.gz bimodal NA NA NA NA GPL22492 Acinetobacter baumannii ATCC 17978 400667 NA NA
GSE85328 GSE85328_Leukaemia_MLL-AF9_RingKO.txt.gz bimodal NA anti-conservative 0.76 GPL9250 Mus musculus 10090 NA NA
GSE81575 GSE81575_gene_exp.diff.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE71159 GSE71159_ECtrl_vs_EfCtrl_gene_exp.diff.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE72172 GSE72172_S2_vs_SIN3_187.txt.gz bimodal NA NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE36695 GSE36695_H9KSR_H9SFM.txt.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE36695 GSE36695_H9KSR_H9SFM.txt.gz bimodal NA NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE35178 GSE35178_isoform_exp.diff.gz conservative NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE34329 GSE34329_processed_RNAseq_N_way_cuffdiff_combined_replicates_NIvIvPAvPS1145.diff.gz conservative NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE79723 GSE79723_DEseq_LG1401-LG437-LG8736_LG1405-LG435-LG8737_DEG_list.csv.gz conservative NA anti-conservative 0.89 GPL13112 Mus musculus 10090 NA NA
GSE87307 GSE87307_mRNA_processed_results.xlsx bimodal NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE62200 GSE62200_Table_S4.xls.gz-sheet-Table S5 N2Y6-E VS LYP9-E conservative NA NA NA NA GPL15432 Oryza sativa 4530 NA NA
GSE62200 GSE62200_Table_S4.xls.gz-sheet-Table S4 bimodal NA NA NA NA GPL15432 Oryza sativa 4530 NA NA
GSE36695 GSE36695_H9KSR_hfSFM.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE36695 GSE36695_H9KSR_hfSFM.txt.gz conservative NA NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE34274 GSE34274_Reads_Table_1_Original_RV_Mu1_RV_Mu3_RV_Wt1_RV_Wt2.expr.txt.gz-set-0 bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE34274 GSE34274_Reads_Table_1_Original_RV_Mu1_RV_Mu3_RV_Wt1_RV_Wt2.expr.txt.gz-set-1 bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE34274 GSE34274_Reads_Table_1_Original_RV_Mu1_RV_Mu3_RV_Wt1_RV_Wt2.expr.txt.gz-set-2 bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE34274 GSE34274_Reads_Table_1_Original_RV_Mu1_RV_Mu3_RV_Wt1_RV_Wt2.expr.txt.gz-set-3 spiky NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE34274 GSE34274_Reads_Table_1_Original_RV_Mu1_RV_Mu3_RV_Wt1_RV_Wt2.expr.txt.gz-set-4 spiky NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE34274 GSE34274_Reads_Table_1_Original_RV_Mu1_RV_Mu3_RV_Wt1_RV_Wt2.expr.txt.gz-set-5 bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE81865 GSE81865_RNAseq_uninjured-14dpi.txt.gz bimodal NA anti-conservative 0.46 GPL21741 Danio rerio 7955 NA NA
GSE76453 GSE76453_cuffdiff_E2.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE53599 GSE53599_D5-1322_vs_RLuc-713_24hrs.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE36695 GSE36695_H9SFM_hfSFM.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE36695 GSE36695_H9SFM_hfSFM.txt.gz conservative NA NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE97129 GSE97129_CG9879_vs_WT_CuffDiff_Output_BDGP5.txt.gz conservative NA NA NA NA GPL16479 Drosophila melanogaster 7227 NA NA
GSE83265 GSE83265_gene_exp.diff.gz conservative NA NA NA NA GPL21103 Mus musculus 10090 NA NA
GSE89504 GSE89504_gene_exp.tabular.txt.gz bimodal NA NA NA NA GPL22492 Acinetobacter baumannii ATCC 17978 400667 NA NA
GSE85950 GSE85950_EHEC_plusminus_Symbioflor.xlsx spiky NA NA NA NA GPL22365 Escherichia coli O157:H7 str. EDL933 155864 NA NA
GSE76453 GSE76453_cuffdiff_siCtl.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE75247 GSE75247_processed_data.txt.gz-set-0 spiky NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE75247 GSE75247_processed_data.txt.gz-set-1 spiky NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE69125 GSE69125_10408_gene_exp.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE60441 GSE60441_gene_exp.diff.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE53599 GSE53599_D5-1322_vs_RLuc-713_48hrs.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE97129 GSE97129_Can_vs_WT_CuffDiff_Output_BDGP5.txt.gz bimodal NA NA NA NA GPL16479 Drosophila melanogaster 7227 NA NA
GSE83819 GSE83819_gene_exp.diff.gz bimodal NA NA NA NA GPL21090 Aspergillus niger 5061 NA NA
GSE85554 GSE85554_deg_and_counts_table_new_read_counts.txt.gz spiky NA other NA GPL18413 Danio rerio 7955 NA NA
GSE76453 GSE76453_cuffdiff_siZNF143.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE77398 GSE77398_ribo_cuffdiff_genes.xls.gz bimodal NA NA NA NA GPL21078 Plasmodium falciparum 5833 NA NA
GSE66619 GSE66619_DRG_Con_vs_Ips_mrna_gene_exp.diff.txt.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE68813 GSE68813_Woolnough2015_CuffDiff_RNA-seq.xlsx-sheet-rep1 CuffDiff Mock vs AGO2-KD conservative NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE68813 GSE68813_Woolnough2015_CuffDiff_RNA-seq.xlsx-sheet-rep1 CuffDiff Mock vs AGO2-KD conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE68813 GSE68813_Woolnough2015_CuffDiff_RNA-seq.xlsx-sheet-rep2 CuffDiff Mock vs AGO2-KD conservative NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE68813 GSE68813_Woolnough2015_CuffDiff_RNA-seq.xlsx-sheet-rep2 CuffDiff Mock vs AGO2-KD conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE52284 GSE52284_gene_exp.diff.gz bimodal NA NA NA NA GPL15167 Schizosaccharomyces pombe 4896 NA NA
GSE53599 GSE53599_D5-2086_vs_RLuc-713_24hrs.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE87824 GSE87824_processed_data.xlsx bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE97129 GSE97129_Comr_vs_WT_CuffDiff_Output_BDGP5.txt.gz bimodal NA NA NA NA GPL16479 Drosophila melanogaster 7227 NA NA
GSE88700 GSE88700_gene_exp.diff.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE87168 GSE87168_Watson_et_al_TOXSCI-16-0457_Diff_Gen_Exp.csv.gz conservative NA NA NA NA GPL22469 Oryzias latipes 8090 NA NA
GSE76453 GSE76453_cuffdiff_veh.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE77862 GSE77862_nhay_-_Alb-Cre.xlsx conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE65406 GSE65406_control_vs_gld1_DESeq.csv.gz conservative NA anti-conservative 1.00 GPL13657 Caenorhabditis elegans 6239 NA NA
GSE66619 GSE66619_Dorsal_Cord_Ipsi_vs_Con_mrna_gene_exp.diff.txt.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE63889 GSE63889_Diff_0U_120U_gene_exp.diff.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE53599 GSE53599_D5-2086_vs_RLuc-713_48hrs.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE97129 GSE97129_Mip40_vs_WT_CuffDiff_Output_BDGP5.txt.gz bimodal NA NA NA NA GPL16479 Drosophila melanogaster 7227 NA NA
GSE76257 GSE76257_O-VG_OGS2.csv.gz bimodal NA anti-conservative 0.21 GPL21271 Nasonia vitripennis 7425 NA NA
GSE83887 GSE83887_gene_exp_Hyl-2_vs_Hyl-2-G.diff.gz bimodal NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE78199 GSE78199_Marsh_Cuffdiff_differential_gene_expression.txt.gz-set-0 conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE78199 GSE78199_Marsh_Cuffdiff_differential_gene_expression.txt.gz-set-1 conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE78199 GSE78199_Marsh_Cuffdiff_differential_gene_expression.txt.gz-set-2 conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE78199 GSE78199_Marsh_Cuffdiff_differential_gene_expression.txt.gz-set-3 conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE78199 GSE78199_Marsh_Cuffdiff_differential_gene_expression.txt.gz-set-4 conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE78199 GSE78199_Marsh_Cuffdiff_differential_gene_expression.txt.gz-set-5 conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE65406 GSE65406_gld1_vs_tumorfast_DESeq.csv.gz conservative NA other NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE63889 GSE63889_Diff_120U_120C_gene_exp.diff.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE53653 GSE53653_st10.5_Foxh1_MO_gene_exp_diff.txt.gz conservative NA NA NA NA GPL13741 Xenopus tropicalis 8364 NA NA
GSE33265 GSE33265_gene_exp.diff.gz bimodal NA NA NA NA GPL9316 Oryza sativa 4530 NA NA
GSE83887 GSE83887_gene_exp_N2_vs_Hyl-2.diff.gz bimodal NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE83584 GSE83584_processed_data_Day0.txt.gz conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE65406 GSE65406_gld1_vs_tumorfed_DESeq.csv.gz conservative NA other NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE63485 GSE63485_KS_J1Csh63_vs_KS_CTRL.two_replicates.all_gene_exp.tbl.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE73077 GSE73077_fpkm_gene_exp.diff.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE53653 GSE53653_st10.5_SB431542_gene_exp_diff.txt.gz conservative NA NA NA NA GPL13741 Xenopus tropicalis 8364 NA NA
GSE52551 GSE52551_delta_Rv3263_expr.txt.gz other NA NA NA NA GPL17967 Mycobacterium tuberculosis H37Rv 83332 NA NA
GSE46066 GSE46066_ICRFVsDMSO.txt.gz bimodal NA anti-conservative 0.79 GPL13112 Mus musculus 10090 NA NA
GSE33265 GSE33265_isoform_exp.diff.gz bimodal NA NA NA NA GPL9316 Oryza sativa 4530 NA NA
GSE83567 GSE83567_gene_exp.diff.gz conservative NA NA NA NA GPL9185 Mus musculus 10090 NA NA
GSE83887 GSE83887_gene_exp_N2_vs_N2G.diff.gz bimodal NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE77034 GSE77034_aza_vs_PBS.gene_exp.tsv.gz conservative NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE83584 GSE83584_processed_data_Day3_5.txt.gz conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE77793 GSE77793_gene_exp_diff_fc_hepatocytes_DMSO_GL_TamerSallam_122012.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE65406 GSE65406_tumorfed_vs_tumorfast_DESeq.csv.gz conservative NA other NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE63485 GSE63485_KS_J1Csh95_vs_KS_CTRL.two_replicates.all_gene_exp.tbl.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE71369 GSE71369_Processed_data_GRO_seq.xlsx-sheet-untethered_vs_tethered_RPM bimodal NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE71369 GSE71369_Processed_data_GRO_seq.xlsx-sheet-untethered_vs_tethered_RPM bimodal NA NA NA NA GPL16479 Drosophila melanogaster 7227 NA NA
GSE60756 GSE60756_Richards_092013_B6_vs_Cast_DESeq_Stats-NormSignal_Annotated.txt.gz uniform NA spiky NA GPL15907 Mus musculus 10090 NA NA
GSE85402 GSE85402_gene_exp.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE81251 GSE81251_Kdm6a_def_mouse_expression_value.xlsx spiky NA uniform NA GPL17021 Mus musculus 10090 NA NA
GSE86837 GSE86837_gene_exp.diff.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE60177 GSE60177_PseudomonasDESeq.txt.gz conservative NA NA NA NA GPL18782 Pseudomonas aeruginosa PAO1 208964 NA NA
GSE77034 GSE77034_aza_vs_vc.gene_exp.tsv.gz conservative NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE80135 GSE80135_Lipo_siProx_sig_results.csv.gz spiky NA anti-conservative 0.73 GPL17303 Homo sapiens 9606 NA NA
GSE65406 GSE65406_youngadults_vs_gld1_DESeq.csv.gz conservative NA anti-conservative 1.00 GPL13657 Caenorhabditis elegans 6239 NA NA
GSE76627 GSE76627_CNBP-cuffdif.xlsx.gz conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE63485 GSE63485_shAML1_ETO_vs_shControl.all_gene_exp.tbl.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE66575 GSE66575_RNAseq_genes_expression.xlsx-sheet-control_vs_comparison.gene_exp conservative NA NA NA NA GPL9185 Mus musculus 10090 NA NA
GSE66575 GSE66575_RNAseq_genes_expression.xlsx-sheet-control_vs_comparison.isoform_e conservative NA NA NA NA GPL9185 Mus musculus 10090 NA NA
GSE65408 GSE65408_processed_data_file.csv.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE40548 GSE40548_gene_exp.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE40548 GSE40548_gene_exp.diff.gz conservative NA NA NA NA GPL13393 Homo sapiens 9606 NA NA
GSE38414 GSE38414_Maize_Silks_mRNA-Seq_gene_exp.diff.gz conservative NA NA NA NA GPL9361 Zea mays 4577 NA NA
GSE89168 GSE89168_36hpupalCNS_WT_dStimKD_CuffDiff.txt.gz conservative NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE91060 GSE91060_E11_vs._E16.xls.gz bimodal NA NA NA NA GPL19005 Gallus gallus 9031 NA NA
GSE87240 GSE87240_gene_expnorliver.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE83405 GSE83405_geneExpDiffData_E14_cells_pnldc1_silencing.xlsx-sheet-Φύλλο1 conservative NA NA NA NA GPL16331 Mus musculus 10090 NA NA
GSE77034 GSE77034_combo_vs_PBS.gene_exp.tsv.gz conservative NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE85321 GSE85321_Supplemental_Table_2_YAD_RNA_seq_.xls.gz-sheet-YAD_Diff analysis bimodal NA NA NA NA GPL17342 Saccharomyces cerevisiae 4932 NA NA
GSE80135 GSE80135_siNeg_Lipo_results.csv.gz spiky NA anti-conservative 0.77 GPL17303 Homo sapiens 9606 NA NA
GSE74131 GSE74131_gene_exp.diff.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE75832 GSE75832_DifferentialExpression_groupwise_comparisons.xlsx-sheet-P14_P2_gene_exp_up conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE75832 GSE75832_DifferentialExpression_groupwise_comparisons.xlsx-sheet-P14_P7_gene_exp_up conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE75832 GSE75832_DifferentialExpression_groupwise_comparisons.xlsx-sheet-P14_P7_gene_exp_down bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE75832 GSE75832_DifferentialExpression_groupwise_comparisons.xlsx-sheet-P7_P2_gene_exp_up conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE75832 GSE75832_DifferentialExpression_groupwise_comparisons.xlsx-sheet-P7_P2_gene_exp_down bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE46486 GSE46486_young_old_deseq.txt.gz conservative NA spiky NA GPL11154 Homo sapiens 9606 NA NA
GSE91060 GSE91060_E11_vs._P1.xlsx bimodal NA NA NA NA GPL19005 Gallus gallus 9031 NA NA
GSE84145 GSE84145_E12.5RET_WT_NULL.txt.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE87240 GSE87240_gene_expsk.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE77034 GSE77034_combo_vs_aza.gene_exp.tsv.gz conservative NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE85321 GSE85321_Supplemental_Table_3_YGD_RNA_seq_.xls.gz-sheet-YGD_Diff analysis bimodal NA NA NA NA GPL17342 Saccharomyces cerevisiae 4932 NA NA
GSE80135 GSE80135_siNeg_siProx_SC_results.csv.gz spiky NA anti-conservative 0.78 GPL17303 Homo sapiens 9606 NA NA
GSE67063 GSE67063_gene_exp.diff.gz bimodal NA NA NA NA GPL18769 Chlorocebus sabaeus 60711 NA NA
GSE75832 GSE75832_DifferentialExpression_withingroup.xlsx-sheet-P2_1_P2_3_gene_exp_up conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE75832 GSE75832_DifferentialExpression_withingroup.xlsx-sheet-P2_1_P2_3_gene_exp_down conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE75832 GSE75832_DifferentialExpression_withingroup.xlsx-sheet-P7_1_P7_2_gene_exp_up conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE75832 GSE75832_DifferentialExpression_withingroup.xlsx-sheet-P7_1_P7_2_gene_exp_down conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE75832 GSE75832_DifferentialExpression_withingroup.xlsx-sheet-P14_2_P14_3_gene_exp_up conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE75832 GSE75832_DifferentialExpression_withingroup.xlsx-sheet-P14_2_P14_3_gene_exp_down conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE55394 GSE55394_gene_exp.diff.txt.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE63758 GSE63758_gene_exp.diff.gz bimodal NA NA NA NA GPL15907 Mus musculus 10090 NA NA
GSE44831 GSE44831_BALBfabD1_BALBmockD1_24hr_post_expr.txt.gz conservative NA NA NA NA GPL9185 Mus musculus 10090 NA NA
GSE38413 GSE38413_Maize_Pericarp_14DAP_mRNA-Seq_gene_exp.diff.gz conservative NA NA NA NA GPL9361 Zea mays 4577 NA NA
GSE99347 GSE99347_H2AfZKO_WT.anno.txt.gz bimodal NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE89168 GSE89168_72hpupalCNS_WT_dStimKD+Recovery_CuffDiff.txt.gz conservative NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE92345 GSE92345_H9_I_pqvalues.poisson.txt.gz conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE92345 GSE92345_H9_I_pqvalues.poisson.txt.gz conservative NA NA NA NA GPL22790 Homo sapiens 9606 NA NA
GSE92345 GSE92345_H9_I_pqvalues.poisson.txt.gz conservative NA NA NA NA GPL22791 Drosophila melanogaster 7227 Homo sapiens 9606
GSE91060 GSE91060_E16_vs._P1.xlsx bimodal NA NA NA NA GPL19005 Gallus gallus 9031 NA NA
GSE87240 GSE87240_hep_gene_exphep.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE77034 GSE77034_combo_vs_vc.gene_exp.tsv.gz conservative NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE68736 GSE68736_gene_exp.diff.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE79822 GSE79822_Deseq_totalRNA.txt.gz bimodal NA anti-conservative 0.46 GPL13657 Caenorhabditis elegans 6239 NA NA
GSE64185 GSE64185_gene_exp.diff.gz conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE51893 GSE51893_wt_v_MZeomesa-sphere_gene_exp.txt.gz conservative NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE60825 GSE60825_Differential_Expression.xlsx-sheet-Cntrl Hypoxia vs ELT-2 Hypoxia conservative NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE60825 GSE60825_Differential_Expression.xlsx-sheet-Cntrl Hypoxia vs ELT-2 Normoxia conservative NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE60825 GSE60825_Differential_Expression.xlsx-sheet-Cntrl Normoxia vs Cntrl Hypoxia conservative NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE60825 GSE60825_Differential_Expression.xlsx-sheet-Cntrl Normoxia vs ELT-2 Hypoxia conservative NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE60825 GSE60825_Differential_Expression.xlsx-sheet-Cntl Normoxia vs ELT-2 Normoxia conservative NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE60825 GSE60825_Differential_Expression.xlsx-sheet-ELT-Normoxia vs ELT-2 Hypoxia conservative NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE44831 GSE44831_BALBfabD1_BALBmockD1_exp.txt.gz conservative NA NA NA NA GPL9185 Mus musculus 10090 NA NA
GSE92345 GSE92345_H9_P_pqvalues.poisson.txt.gz bimodal NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE92345 GSE92345_H9_P_pqvalues.poisson.txt.gz bimodal NA NA NA NA GPL22790 Homo sapiens 9606 NA NA
GSE92345 GSE92345_H9_P_pqvalues.poisson.txt.gz bimodal NA NA NA NA GPL22791 Drosophila melanogaster 7227 Homo sapiens 9606
GSE77034 GSE77034_vc_vs_PBS.gene_exp.tsv.gz conservative NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE85321 GSE85321_Supplemental_Table_5_YAR_RNA_seq_.xls.gz-sheet-YAR diff. analysis bimodal NA NA NA NA GPL17342 Saccharomyces cerevisiae 4932 NA NA
GSE79822 GSE79822_cuffdiffs_mRNA.txt.gz conservative NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE63794 GSE63794_gene_exp.diff.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE44831 GSE44831_BALBfab_BALBmj_gene_exp.diff.txt.gz conservative NA NA NA NA GPL9185 Mus musculus 10090 NA NA
GSE38413 GSE38413_Maize_Pericarp_25DAP_mRNA-Seq_gene_exp.diff.gz conservative NA NA NA NA GPL9361 Zea mays 4577 NA NA
GSE96814 GSE96814_Deseq2_MS2RsaA.xlsx-sheet-Feuil1 other NA other NA GPL19006 Staphylococcus aureus 1280 NA NA
GSE92345 GSE92345_HEK_I_pqvalues.poisson.txt.gz conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE92345 GSE92345_HEK_I_pqvalues.poisson.txt.gz conservative NA NA NA NA GPL22790 Homo sapiens 9606 NA NA
GSE92345 GSE92345_HEK_I_pqvalues.poisson.txt.gz conservative NA NA NA NA GPL22791 Drosophila melanogaster 7227 Homo sapiens 9606
GSE77032 GSE77032_aza_vs_PBS.gene_exp.tsv.gz conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE85321 GSE85321_Supplemental_Table_6_JHD2_OE_YAD_.xls.gz-sheet-OE_EV_YAD_Diff analysis conservative NA NA NA NA GPL17342 Saccharomyces cerevisiae 4932 NA NA
GSE74381 GSE74381_gene_exp_control2vsZeb2cKO2diff.xlsx bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE80068 GSE80068_col_dms3_gene_exp.diff.gz conservative NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE70728 GSE70728_KDM2B_RNAseq_DEG.diff.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE69721 GSE69721_UP-_and_Down-regulated_genes.txt.gz bimodal NA NA NA NA GPL19942 Haemaphysalis flava 181088 NA NA
GSE64544 GSE64544_LV_processed.txt.gz conservative NA NA NA NA GPL16540 Canis lupus familiaris 9615 NA NA
GSE42805 GSE42805_acute_gene.diff.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE44831 GSE44831_C57BL6fabD1_C57BL6mockD1_24hr_post_expr.txt.gz conservative NA NA NA NA GPL9185 Mus musculus 10090 NA NA
GSE96814 GSE96814_Deseq_TotRNA.xlsx-sheet-Feuil1 other NA other NA GPL19006 Staphylococcus aureus 1280 NA NA
GSE92345 GSE92345_HEK_P_pqvalues.poisson.txt.gz bimodal NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE92345 GSE92345_HEK_P_pqvalues.poisson.txt.gz bimodal NA NA NA NA GPL22790 Homo sapiens 9606 NA NA
GSE92345 GSE92345_HEK_P_pqvalues.poisson.txt.gz bimodal NA NA NA NA GPL22791 Drosophila melanogaster 7227 Homo sapiens 9606
GSE77032 GSE77032_aza_vs_vc.gene_exp.tsv.gz conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE85321 GSE85321_Supplemental_Table_7_JHD2_OE_YAR_.xls.gz-sheet-OE_EV_YAR_Diff analysis conservative NA NA NA NA GPL17342 Saccharomyces cerevisiae 4932 NA NA
GSE78834 GSE78834_gene_expression_profiles.txt.gz bimodal NA NA NA NA GPL21550 Desulfovibrio vulgaris 881 NA NA
GSE80068 GSE80068_col_h2h9_gene_exp.diff.gz conservative NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE64544 GSE64544_MV_processed.txt.gz conservative NA NA NA NA GPL16540 Canis lupus familiaris 9615 NA NA
GSE62647 GSE62647_Setd8_differential_expression_analyses.txt.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE47395 GSE47395_gene_exp.diff.anno.known.csv.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE42805 GSE42805_cds.diff.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE52385 GSE52385_siCtrl_VS_siSRA_assemblenewgenes.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE44831 GSE44831_C57BL6fabD1_C57BL6mockD1_exp.txt.gz conservative NA NA NA NA GPL9185 Mus musculus 10090 NA NA
GSE87890 GSE87890_vgat1_csv.csv.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE92874 GSE92874_RNA.txt.gz bimodal NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE95181 GSE95181_HNS_counts_and_DGE.txt.gz bimodal NA NA NA NA GPL17280 Mycobacterium tuberculosis H37Rv 83332 NA NA
GSE66155 GSE66155_regulation.txt.gz conservative NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE77032 GSE77032_combo_vs_PBS.gene_exp.tsv.gz conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE80707 GSE80707_gene_exp.diff.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE78527 GSE78527_siSNRNP40_siControl_processed.txt.gz conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE80068 GSE80068_col_nrpe1_gene_exp.diff.gz conservative NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE42805 GSE42805_cds_exp.diff.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE52385 GSE52385_siCtrl_VS_siSRA_notassemblenewgenes.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46807 GSE46807_GEO_values_TAF4_RNAseq_Tophat.Cufflinks_mm9_WeiYi.txt.gz-set-0 bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE46807 GSE46807_GEO_values_TAF4_RNAseq_Tophat.Cufflinks_mm9_WeiYi.txt.gz-set-1 bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE46807 GSE46807_GEO_values_TAF4_RNAseq_Tophat.Cufflinks_mm9_WeiYi.txt.gz-set-2 conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE44831 GSE44831_C57BLfab_C57BLmj_gene_exp.diff.txt.gz conservative NA NA NA NA GPL9185 Mus musculus 10090 NA NA
GSE87890 GSE87890_vgat2_csv.csv.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE79677 GSE79677_Crossbred_vs._Purebred_comparison_group.tabular.txt.gz conservative NA NA NA NA GPL15749 Bos taurus 9913 NA NA
GSE78965 GSE78965_C57Bl6_MCS_vs_FST_acute_gene_differential_expression_testing.txt.gz conservative NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE77032 GSE77032_combo_vs_aza.gene_exp.tsv.gz conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE71916 GSE71916_Expression_Cufflinks_siRbfox1_3+Flag-Rbfox1_C_compared_to_siRbfox1_3+EGFP.txt.gz other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE67787 GSE67787_con_bps_wex_RNAseq_gene_exp.diff.gz conservative NA NA NA NA GPL14844 Rattus norvegicus 10116 NA NA
GSE70283 GSE70283_cuffdiff_gene_exp.diff.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE66506 GSE66506_DE_analysis_010714.xlsx-sheet-All_Genes bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE42805 GSE42805_gene_exp.diff.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE52450 GSE52450_Cuffdiff_on_pre-pro-B_and_pro-B_aligned_reads_transcript_differential_expression_testing_Bv46.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE44831 GSE44831_matrix_BALB_C57BL.txt.gz conservative NA NA NA NA GPL9185 Mus musculus 10090 NA NA
GSE36872 GSE36872_NascentSeq_Mouse_Liver_NormalizedGeneSignal.txt.gz spiky NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE87890 GSE87890_vglut1_csv.csv.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE98875 GSE98875_Diff.summary.xlsx-sheet-all_genes conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE96072 GSE96072_Galaxy106-_Cuffdiff_on_data_40__data_39_and_others_transcript_differential_expression_testing.tabular.txt.gz bimodal NA NA NA NA GPL23172 Enterococcus faecalis 1351 NA NA
GSE79677 GSE79677_One_by_one_comparisons.tabular.txt.gz conservative NA NA NA NA GPL15749 Bos taurus 9913 NA NA
GSE78965 GSE78965_C57Bl6_MCS_vs_FST_chronic_gene_differential_expression_testing.txt.gz conservative NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE77032 GSE77032_combo_vs_vc.gene_exp.tsv.gz conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73083 GSE73083_3F_Lef1_PlusversusMinusDOX_ProcessedFiles.txt.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE79416 GSE79416_new-lncRNA_transcript_output.xls.gz bimodal NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE71916 GSE71916_Expression_Cufflinks_siRbfox1_3+Flag-Rbfox1_N_compared_to_siRbfox1_3+EGFP.txt.gz other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE66478 GSE66478_gene_exp.txt.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE55090 GSE55090_cds_exp.diff.txt.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE42805 GSE42805_isoform_exp.diff.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE50068 GSE50068_Cuffdiff_output.txt.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE36871 GSE36871_RNASeq_Mouse_Liver_NormalizedGeneSignal.txt.gz spiky NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE87890 GSE87890_vglut2_csv.csv.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE82164 GSE82164_Cuffdiff_gene_differential_expression_testing.tabular.txt.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE96072 GSE96072_Galaxy24-_Cuffdiff_on_data_7__data_6_and_others_transcript_differential_expression_testing.tabular.txt.gz bimodal NA NA NA NA GPL23172 Enterococcus faecalis 1351 NA NA
GSE77032 GSE77032_vc_vs_PBS.gene_exp.tsv.gz conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE77351 GSE77351_Farshchian.txt.gz spiky NA anti-conservative 0.89 GPL15103 Mus musculus 10090 NA NA
GSE73082 GSE73082_F_Sp5_PlusversusMinusDOX_ProcessedFiles.txt.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE77218 GSE77218_A3_A2.xlsx-sheet-express bimodal NA NA NA NA GPL18580 Vitis vinifera 29760 NA NA
GSE70766 GSE70766_Differential_expression.txt.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE70766 GSE70766_Differential_expression.txt.gz bimodal NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE68160 GSE68160_GRdim-RNASeq.xlsx bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE66478 GSE66478_isoform_exp.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE55090 GSE55090_gene_exp.diff.txt.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE42805 GSE42805_promoters.diff.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE44846 GSE44846_O157_genome_total.xlsx.gz-sheet-Sheet1 bimodal NA NA NA NA GPL16748 Escherichia coli O157:H7 83334 NA NA
GSE33141 GSE33141_TopHatTranscriptsFPKM.xls.gz-sheet-mRNA-Transcripts-FPKM other NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE33141 GSE33141_TopHatTranscriptsFPKM.xls.gz-sheet-Pseudogenes-FPKM other NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE87890 GSE87890_vglut3_csv.csv.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE96072 GSE96072_Galaxy55-_Cuffdiff_on_data_2__data_4_and_others_transcript_differential_expression_testing.tabular.txt.gz bimodal NA NA NA NA GPL23172 Enterococcus faecalis 1351 NA NA
GSE76771 GSE76771_ALL_gene_expression.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE77218 GSE77218_A4_A2.xlsx-sheet-express bimodal NA NA NA NA GPL18580 Vitis vinifera 29760 NA NA
GSE70711 GSE70711_IRF4hi.vs.IRF8hi.gene_exp.diff.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE55870 GSE55870_CAF90vsNF1493.xlsx.gz conservative NA other NA GPL15907 Mus musculus 10090 NA NA
GSE55090 GSE55090_isoform_exp.diff.txt.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE42805 GSE42805_splicing.diff.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE82164 GSE82164_Cuffdiff_transcript_differential_expression_testing.tabular.txt.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE58467 GSE58467_FPKM.txt.gz bimodal NA NA NA NA GPL18799 Enterococcus faecalis 1351 NA NA
GSE80370 GSE80370_col_morc6_gene_exp.diff.gz conservative NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE80370 GSE80370_col_morc6_gene_exp.diff.gz conservative NA NA NA NA GPL17639 Arabidopsis thaliana 3702 NA NA
GSE77218 GSE77218_A4_A3.xlsx-sheet-express bimodal NA NA NA NA GPL18580 Vitis vinifera 29760 NA NA
GSE70711 GSE70711_IRF8cKO_GCBCell_RPKM_exp_1.csv.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE56966 GSE56966_IL6Ra_WT.xlsx.gz-sheet-gene_exp other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE56966 GSE56966_IL6Ra_WT.xlsx.gz-sheet-gene_notest conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE55090 GSE55090_tss_group_exp.diff.txt.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE42805 GSE42805_tss_group_exp.diff.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE83560 GSE83560_degTest_byCuffdiff.xlsx-sheet-T_11_12_P-T_11_12_C conservative NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE83560 GSE83560_degTest_byCuffdiff.xlsx-sheet-T_11_19_1_P-T_11_19_1_C conservative NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE83560 GSE83560_degTest_byCuffdiff.xlsx-sheet-T_72_P-T_72_C conservative NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE79408 GSE79408_gene_exp.diff.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE90876 GSE90876_Cuffdiff_PSM_vs_SM.txt.gz conservative NA NA NA NA GPL21290 Homo sapiens 9606 NA NA
GSE77113 GSE77113_GC_WT_vs_Hdac3KO.diff.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE80370 GSE80370_col_suvh2suvh9_gene_exp.diff.gz conservative NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE80370 GSE80370_col_suvh2suvh9_gene_exp.diff.gz conservative NA NA NA NA GPL17639 Arabidopsis thaliana 3702 NA NA
GSE70711 GSE70711_IRF8cKO_GCBCell_RPKM_exp_2.csv.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE67437 GSE67437_KO-ILC2-mLN_021815_vs_WT-ILC2-mLN_021815.txt.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE56966 GSE56966_MyD88_WT.xlsx.gz-sheet-gene_exp other NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE56966 GSE56966_MyD88_WT.xlsx.gz-sheet-gene_notest conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE51975 GSE51975_C_v_OVOL1_2_gene_exp.diff.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE81055 GSE81055_gene_exp.diff.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE90876 GSE90876_Cuffdiff_SM_vs_SM_Dev.txt.gz conservative NA NA NA NA GPL21290 Homo sapiens 9606 NA NA
GSE92246 GSE92246_gene_exp.diff.gz bimodal NA NA NA NA GPL16192 Schizosaccharomyces pombe 4896 NA NA
GSE81114 GSE81114_gene_exp.diff.gz conservative NA NA NA NA GPL18694 Rattus norvegicus 10116 NA NA
GSE77113 GSE77113_Hdac3KO_non-GC_vs_GC.diff.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE77675 GSE77675_Old_vs_Young_isoforms_expression.txt.gz bimodal NA NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE71527 GSE71527_KO_SNI_Sal_vs_KO_SNI_DMI.xlsx conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE60642 GSE60642_AB056_2.xlsx.gz-set-0 bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE60642 GSE60642_AB056_2.xlsx.gz-set-1 bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE60642 GSE60642_AB056_2.xlsx.gz-set-2 bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE59017 GSE59017_gene_exp.diff.gz conservative NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE57396 GSE57396_Cuttdiff_cds_exp.diff.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE51975 GSE51975_C_v_OVOL1_2_isoform_exp.diff.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE81055 GSE81055_gene_exp.diff_bias.txt.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE77229 GSE77229_gene_exp.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE95234 GSE95234_IPInputFPKM.xlsx conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE79633 GSE79633_DESeq2_out_FO_GFP_vs_WT.txt.gz spiky NA anti-conservative 0.77 GPL13112 Mus musculus 10090 NA NA
GSE77113 GSE77113_WT_non-GC_vs_GC.diff.gz bimodal NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE71527 GSE71527_KO_naive_vs_KO_SNI_Sal.xlsx conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE68806 GSE68806_Galaxy_data_Cuffdiff.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE67335 GSE67335_LEF1_Th1.Vs.pMIG_Th1.DESeq_Analysis_DE_Genes.txt.gz other NA other NA GPL17021 Mus musculus 10090 NA NA
GSE60641 GSE60641_AB03_2.xlsx.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE57227 GSE57227_PHH_GW_vs_DMSO_RNA_seq_gene_exp.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE59017 GSE59017_isoform_exp.diff.gz conservative NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE51975 GSE51975_C_v_OVOL1_gene_exp.diff.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE84301 GSE84301_Pub_vs_Prepub.Differential_analysis_results.txt.gz conservative NA NA NA NA GPL22146 Capra hircus 9925 NA NA
GSE95234 GSE95234_NotInfectedInfectedFPKM.xlsx-set-0 conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE95234 GSE95234_NotInfectedInfectedFPKM.xlsx-set-1 conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE77113 GSE77113_non-GC_WT_vs_Hdac3KO.diff.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE86202 GSE86202_1_TreatVSControl_circRNA_differential_expression.xlsx spiky NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE71527 GSE71527_WT_SNI_DMI_vs_KO_SNI_DMI.xlsx conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE61351 GSE61351_Cont_ComparedTo_PTH_D28_CuffDiffAnalysis1.xls.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE64757 GSE64757_All_FPKMs_GEO.csv.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE54433 GSE54433_gene_exp.diff.txt.gz conservative NA NA NA NA GPL13821 Saccharomyces cerevisiae 4932 NA NA
GSE51975 GSE51975_C_v_OVOL1_isoform_exp.diff.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE34097 GSE34097_aff2_genes_cufflinks.txt.gz conservative NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE97256 GSE97256_Y1differentialGenes.tab.gz conservative NA NA NA NA GPL21930 Danio rerio 7955 NA NA
GSE63224 GSE63224_All_unigene_expression.txt.gz-set-0 other NA NA NA NA GPL15080 Fragaria x ananassa 3747 NA NA
GSE63224 GSE63224_All_unigene_expression.txt.gz-set-1 other NA NA NA NA GPL15080 Fragaria x ananassa 3747 NA NA
GSE63224 GSE63224_All_unigene_expression.txt.gz-set-2 other NA NA NA NA GPL15080 Fragaria x ananassa 3747 NA NA
GSE63224 GSE63224_All_unigene_expression.txt.gz-set-3 other NA NA NA NA GPL15080 Fragaria x ananassa 3747 NA NA
GSE63224 GSE63224_All_unigene_expression.txt.gz-set-4 other NA NA NA NA GPL15080 Fragaria x ananassa 3747 NA NA
GSE79758 GSE79758_gene_exp.diff.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE76868 GSE76868_Table_S1_RNA-seq.xlsx bimodal NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE71527 GSE71527_WT_SNI_Sal_vs_KO_SNI_Sal.xlsx conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE63810 GSE63810_BCKO_RNASeq_Data.xlsx-sheet-GenesDiffExp conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE51975 GSE51975_C_v_OVOL2_gene_exp.diff.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE34097 GSE34097_aff3_genes_cufflinks.txt.gz conservative NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE83828 GSE83828_Gene_expression_data.xlsx bimodal NA NA NA NA GPL22093 Cyanidioschyzon merolae 45157 NA NA
GSE86202 GSE86202_Gene_differential_expression.xlsx conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE80718 GSE80718_gene_exp.diff.gz bimodal NA NA NA NA GPL21781 Linum usitatissimum 4006 NA NA
GSE73940 GSE73940_cuffdiff.gene_exp.diff.gz conservative NA NA NA NA GPL21018 Gallus gallus 9031 NA NA
GSE71527 GSE71527_WT_SNI_Sal_vs_WT_SNI_DMI.xlsx conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE51975 GSE51975_C_v_OVOL2_isoform_exp.diff.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE44536 GSE44536_GEO_Processed_file_excel.xlsx.gz-sheet-FPKM_NC_009338 bimodal NA NA NA NA GPL16708 Mycolicibacterium gilvum PYR-GCK 350054 NA NA
GSE34097 GSE34097_aff4_genes_cufflinks.txt.gz conservative NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE54641 GSE54641_DESeq.txt.gz conservative NA anti-conservative 0.98 GPL11154 Homo sapiens 9606 NA NA
GSE80349 GSE80349_results.txt.gz-set-1 conservative NA NA NA NA GPL21742 Schizosaccharomyces pombe 4896 NA NA
GSE73940 GSE73940_cuffdiff.isoform_exp.diff.gz conservative NA NA NA NA GPL21018 Gallus gallus 9031 NA NA
GSE71527 GSE71527_WT_naive_vs_KO_naive.xlsx conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE71252 GSE71252_Akdogan_RNASeq_Cuffdiff_JUL232015.xlsx-sheet-geneExpDiffData bimodal NA NA NA NA GPL17143 Saccharomyces cerevisiae 4932 NA NA
GSE71252 GSE71252_Akdogan_RNASeq_Cuffdiff_JUL232015.xlsx-sheet-isoformExpDiffData bimodal NA NA NA NA GPL17143 Saccharomyces cerevisiae 4932 NA NA
GSE65025 GSE65025_WT-HSF_gene_exp.diff.gz conservative NA NA NA NA GPL19657 Oryza sativa Japonica Group 39947 NA NA
GSE54641 GSE54641_cuffdiff2_gene_exp.diff.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE61969 GSE61969_gene_exp.diff.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE61969 GSE61969_gene_exp.diff.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE55682 GSE55682_16h.xls.gz other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE72105 GSE72105_Differential_Gene_Expression_Summary_D0.txt.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE72994 GSE72994_cds_exp.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE71527 GSE71527_WT_naive_vs_WT_SNI_Sal.xlsx conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE59481 GSE59481_PIG_vs_GFP_DE_genes.txt.gz bimodal NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE65024 GSE65024_WT-bhlh_gene_exp.diff.gz bimodal NA NA NA NA GPL19657 Oryza sativa Japonica Group 39947 NA NA
GSE61238 GSE61238_gene_exp.diff.gz conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE58326 GSE58326_gene_exp.txt.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE41908 GSE41908_E11.5_E13.5f_cuffdiff1.2.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE98759 GSE98759_gene_exp.txt.gz other NA other NA GPL21493 Mus musculus 10090 NA NA
GSE76865 GSE76865_gene_exp.diff.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE81059 GSE81059_cns-control_vs_cns-hh.csv.gz conservative NA other NA GPL15553 Schmidtea mediterranea 79327 NA NA
GSE55682 GSE55682_20h.xls.gz other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE72105 GSE72105_Differential_Gene_Expression_Summary_D6.txt.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE72994 GSE72994_gene_exp.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE65328 GSE65328_A17_6V.tab.gz conservative NA anti-conservative 0.92 GPL19708 Medicago truncatula 3880 NA NA
GSE65022 GSE65022_cuffdiff-WT_CD_gene_exp.diff.gz bimodal NA NA NA NA GPL19657 Oryza sativa Japonica Group 39947 NA NA
GSE41908 GSE41908_E11.5_E13.5m_cuffdiff1.2.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE93280 GSE93280_gene_exp.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE76864 GSE76864_gene_exp.diff.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE81059 GSE81059_cns-control_vs_cns-ptc.csv.gz conservative NA other NA GPL15553 Schmidtea mediterranea 79327 NA NA
GSE86159 GSE86159_significance_calls_genes_overexpression.txt.gz conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE55682 GSE55682_24h.xls.gz other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE72105 GSE72105_Differential_Gene_Expression_Summary_myotubes.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE72994 GSE72994_isoform_exp.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE59020 GSE59020_ETS1_gene_exp_all.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE41908 GSE41908_E9.5_E11.5_cuffdiff1.2.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE95481 GSE95481_GCN5_RNAi_vs_WT_root_tip_gene_exp.diff.gz conservative NA NA NA NA GPL22250 Oryza sativa Japonica Group 39947 NA NA
GSE86159 GSE86159_significance_calls_genes_tam_timecourse.txt.gz conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE78902 GSE78902_DEseq_DB001-DB004_DB002-DB003_DEG_list.csv.gz other NA other NA GPL13112 Mus musculus 10090 NA NA
GSE78996 GSE78996_CTR_vs_EAE_Cuffdiff_analysis.xlsx bimodal NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE55682 GSE55682_48h.xls.gz other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE53040 GSE53040_wtDMSOvswtD1.txt.gz bimodal NA NA NA NA GPL16164 Neurospora crassa 5141 NA NA
GSE72105 GSE72105_Differential_Gene_Expression_Summary_usp10.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE72994 GSE72994_promoters.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE59020 GSE59020_U0126_gene_exp_all.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE89110 GSE89110_RNAseq_shPFKB4_p53_logFC.txt.gz-set-0 bimodal NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE89110 GSE89110_RNAseq_shPFKB4_p53_logFC.txt.gz-set-1 bimodal NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE89110 GSE89110_RNAseq_shPFKB4_p53_logFC.txt.gz-set-2 bimodal NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE89110 GSE89110_RNAseq_shPFKB4_p53_logFC.txt.gz-set-3 bimodal NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE95481 GSE95481_GCN5_RNAi_vs_WT_whole_root_gene_exp.diff.gz conservative NA NA NA NA GPL22250 Oryza sativa Japonica Group 39947 NA NA
GSE95850 GSE95850_RUCA-I_WT_vs_miR-203_KO_gene_expression.csv.gz other NA NA NA NA GPL18694 Rattus norvegicus 10116 NA NA
GSE86187 GSE86187_p0wt-ko-gene_exp.diff.gz bimodal NA NA NA NA GPL10010 Mus musculus 10090 NA NA
GSE93280 GSE93280_isoform_exp.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE72762 GSE72762_DEseq_LS023-LS024-LS025_LS030-LS031-LS032_DEG_list.txt.gz conservative NA other NA GPL13112 Mus musculus 10090 NA NA
GSE72059 GSE72059_21_gene_exp.diff.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE55682 GSE55682_Baf250a6days.csv.gz other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE53040 GSE53040_wtDMSOvswtTX129.txt.gz conservative NA NA NA NA GPL16164 Neurospora crassa 5141 NA NA
GSE72994 GSE72994_tss_group_exp.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE69113 GSE69113_AIPVUIP_differential_expression.txt.gz other NA NA NA NA GPL11429 Sus scrofa 9823 NA NA
GSE47095 GSE47095_splicing_diff.txt.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE86187 GSE86187_p6wt-ko_gene_exp.diff.gz bimodal NA NA NA NA GPL10010 Mus musculus 10090 NA NA
GSE81007 GSE81007_cds.diff.gz conservative NA NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE72761 GSE72761_DESeq_LS007-LS008-LS010_LS015-LS016-LS018_DEG_list.txt.gz conservative NA other NA GPL13112 Mus musculus 10090 NA NA
GSE53040 GSE53040_wtDMSOvswtTX34.txt.gz bimodal NA NA NA NA GPL16164 Neurospora crassa 5141 NA NA
GSE69113 GSE69113_BIPVUIP_differential_expression.txt.gz other NA NA NA NA GPL11429 Sus scrofa 9823 NA NA
GSE49843 GSE49843_gene_exp.diff_22345-22353.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE43194 GSE43194_E11_ICR_abundance_rep1.txt.gz-set-0 bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE43194 GSE43194_E11_ICR_abundance_rep1.txt.gz-set-0 bimodal NA NA NA NA GPL16133 Gallus gallus 9031 NA NA
GSE43194 GSE43194_E11_ICR_abundance_rep1.txt.gz-set-1 spiky NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE43194 GSE43194_E11_ICR_abundance_rep1.txt.gz-set-1 spiky NA NA NA NA GPL16133 Gallus gallus 9031 NA NA
GSE43194 GSE43194_E11_ICR_abundance_rep1.txt.gz-set-2 spiky NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE43194 GSE43194_E11_ICR_abundance_rep1.txt.gz-set-2 spiky NA NA NA NA GPL16133 Gallus gallus 9031 NA NA
GSE43614 GSE43614_diff_out.txt.gz other NA NA NA NA GPL9269 Caenorhabditis elegans 6239 NA NA
GSE98739 GSE98739_Q111SST_vs_Q111DOP_DEGs_with_fpkm.diff.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE80503 GSE80503_RNASeqProcessedDESeqData.xlsx conservative NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE72764 GSE72764_DEseq_LS39-LS40-LS42_LS44-LS45-LS48_DEG_list.csv.gz conservative NA other NA GPL13112 Mus musculus 10090 NA NA
GSE77499 GSE77499_Dd2CQ_Dd2_3D7_gene_exp.diff.gz conservative NA NA NA NA GPL21078 Plasmodium falciparum 5833 NA NA
GSE53040 GSE53040_wtDMSOvswtTX87.txt.gz conservative NA NA NA NA GPL16164 Neurospora crassa 5141 NA NA
GSE61202 GSE61202_NICvsMOdifferential_expression.txt.gz conservative NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE58464 GSE58464_RNA-seq_tophat_microrazers_results.txt.gz-set-0 conservative NA NA NA NA GPL17303 Homo sapiens 9606 NA NA
GSE58464 GSE58464_RNA-seq_tophat_microrazers_results.txt.gz-set-1 conservative NA NA NA NA GPL17303 Homo sapiens 9606 NA NA
GSE43194 GSE43194_E11_ICR_abundance_rep2.txt.gz-set-0 spiky NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE43194 GSE43194_E11_ICR_abundance_rep2.txt.gz-set-0 spiky NA NA NA NA GPL16133 Gallus gallus 9031 NA NA
GSE43194 GSE43194_E11_ICR_abundance_rep2.txt.gz-set-1 spiky NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE43194 GSE43194_E11_ICR_abundance_rep2.txt.gz-set-1 spiky NA NA NA NA GPL16133 Gallus gallus 9031 NA NA
GSE43194 GSE43194_E11_ICR_abundance_rep2.txt.gz-set-2 spiky NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE43194 GSE43194_E11_ICR_abundance_rep2.txt.gz-set-2 spiky NA NA NA NA GPL16133 Gallus gallus 9031 NA NA
GSE33782 GSE33782_gene_exp.diff.txt.gz conservative NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE98739 GSE98739_Q7SST_vs_Q111DOP_DEGs_with_fpkm.diff.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE86211 GSE86211_CmrA_transcriptome_Expression_of_all_genes.xlsx-sheet-PA14vsPJ01dT other NA NA NA NA GPL21297 Pseudomonas aeruginosa 287 NA NA
GSE81007 GSE81007_cds_exp.diff.gz conservative NA NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE87635 GSE87635_CNOT3KO-WT.txt.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE77499 GSE77499_Dd2CQ_Dd2_3D7_isoform_exp.diff.gz conservative NA NA NA NA GPL21078 Plasmodium falciparum 5833 NA NA
GSE66158 GSE66158_all_genes_FPKM.txt.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE56284 GSE56284_gene_exp.txt.gz bimodal NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE53976 GSE53976_gene_exp.diff.txt.gz conservative NA NA NA NA GPL13797 Gallus gallus 9031 NA NA
GSE43194 GSE43194_HH18chick_abundance.txt.gz-set-0 spiky NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE43194 GSE43194_HH18chick_abundance.txt.gz-set-0 spiky NA NA NA NA GPL16133 Gallus gallus 9031 NA NA
GSE43194 GSE43194_HH18chick_abundance.txt.gz-set-1 spiky NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE43194 GSE43194_HH18chick_abundance.txt.gz-set-1 spiky NA NA NA NA GPL16133 Gallus gallus 9031 NA NA
GSE43194 GSE43194_HH18chick_abundance.txt.gz-set-2 bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE43194 GSE43194_HH18chick_abundance.txt.gz-set-2 bimodal NA NA NA NA GPL16133 Gallus gallus 9031 NA NA
GSE33782 GSE33782_isoform_exp.diff.txt.gz conservative NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE98739 GSE98739_Q7SST_vs_Q111SST_DEGs_with_fpkm.diff.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE77769 GSE77769_RNA_diff_final.txt.gz spiky NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE81007 GSE81007_gene_exp.diff.gz conservative NA NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE36005 GSE36005_emo_gene.diff.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE90974 GSE90974_Cuffdiff_Gene_Rb_24v36.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE82210 GSE82210_cuffdiff_lncOL1KO_vs_Ctrl.gene.fpkm.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE83137 GSE83137_H2_vs_Lanact_pval.csv.gz other NA other NA GPL21996 Streptomyces albus 1888 NA NA
GSE58586 GSE58586_RNAseq-PDX-paired-tr-vs-untr_allintensity-filtered.txt.gz other NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE49147 GSE49147_ESC_KO_vs_WT.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE36005 GSE36005_res_gene.diff.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE32038 GSE32038_cds_exp.diff.gz conservative NA NA NA NA GPL11203 Drosophila melanogaster 7227 NA NA
GSE90974 GSE90974_Cuffdiff_Gene_Rb_24v48.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE91075 GSE91075_gene_exp_WT1_KO1.txt.gz conservative NA NA NA NA GPL15103 Mus musculus 10090 NA NA
GSE81007 GSE81007_isoform_exp.diff.gz conservative NA NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE49147 GSE49147_iPS_PF1_vs_PF2.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE36005 GSE36005_sus_gene.diff.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE32038 GSE32038_gene_exp.diff.gz conservative NA NA NA NA GPL11203 Drosophila melanogaster 7227 NA NA
GSE90974 GSE90974_Cuffdiff_Gene_Rb_36v48.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE91075 GSE91075_gene_exp_WT2_KO2.txt.gz conservative NA NA NA NA GPL15103 Mus musculus 10090 NA NA
GSE77185 GSE77185_gene_exp.diff.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE74148 GSE74148_RNA-seq0415.xlsx-set-0 conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE74148 GSE74148_RNA-seq0415.xlsx-set-1 conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE74148 GSE74148_RNA-seq0415.xlsx-set-2 conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE74148 GSE74148_RNA-seq0415.xlsx-set-3 bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE74148 GSE74148_RNA-seq0415.xlsx-set-4 bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE74148 GSE74148_RNA-seq0415.xlsx-set-5 conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE58609 GSE58609_MEF_WT_DKO.deseq.txt.gz-set-0 conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE58609 GSE58609_MEF_WT_DKO.deseq.txt.gz-set-1 conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE71948 GSE71948_RNASeqProcessedDESeqData.txt.gz conservative NA other NA GPL9250 Mus musculus 10090 NA NA
GSE49147 GSE49147_iPS_TTF1_vs_TTF2.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE90974 GSE90974_Cuffdiff_Gene_RbvRv_24.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE81007 GSE81007_promoters.diff.gz conservative NA NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE65321 GSE65321_RNASeqProcessedDESeqData.txt.gz bimodal NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE63750 GSE63750_chemhigh-batch-result-using-R-DeSeq.csv.gz bimodal NA other NA GPL19476 Staphylococcus aureus 1280 NA NA
GSE63750 GSE63750_chemhigh-batch-result-using-R-DeSeq.csv.gz bimodal NA other NA GPL20613 Staphylococcus aureus 1280 NA NA
GSE58405 GSE58405_gene_exp.diff.gz bimodal NA NA NA NA GPL18635 Mus musculus 10090 NA NA
GSE32038 GSE32038_isoform_exp.diff.gz conservative NA NA NA NA GPL11203 Drosophila melanogaster 7227 NA NA
GSE73972 GSE73972_atxvsWT_gene_exp_diff.txt.gz bimodal NA NA NA NA GPL17639 Arabidopsis thaliana 3702 NA NA
GSE90974 GSE90974_Cuffdiff_Gene_RbvRv_36.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE93620 GSE93620_gene_exp.diff.gz conservative NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE81007 GSE81007_splicing.diff.gz conservative NA NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE78878 GSE78878_30Cvs30P_score.txt.gz bimodal NA NA NA NA GPL15716 Caenorhabditis elegans 6239 NA NA
GSE64854 GSE64854_cds.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE65321 GSE65321_RNASeqProcessedDESeqData_GSM1631482-GSM1631483.txt.gz conservative NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE63555 GSE63555_Ago2_immunoprecipitation_cuffdiff_fpkm.txt.gz conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE63750 GSE63750_chemlow-batch-result-using-R-DeSeq.csv.gz other NA other NA GPL19476 Staphylococcus aureus 1280 NA NA
GSE63750 GSE63750_chemlow-batch-result-using-R-DeSeq.csv.gz other NA other NA GPL20613 Staphylococcus aureus 1280 NA NA
GSE58405 GSE58405_isoform_exp.diff.gz bimodal NA NA NA NA GPL18635 Mus musculus 10090 NA NA
GSE53022 GSE53022_mt_vs_wt.DESeq.txt.gz conservative NA other NA GPL14875 Danio rerio 7955 NA NA
GSE90974 GSE90974_Cuffdiff_Gene_RbvRv_48.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE81007 GSE81007_tss_group_exp.diff.gz conservative NA NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE78878 GSE78878_30CvsN2C_score.txt.gz bimodal NA NA NA NA GPL15716 Caenorhabditis elegans 6239 NA NA
GSE80433 GSE80433_gene_exp.diff.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE79286 GSE79286_CYC2vsWT_Conj-2.5hr_RNA-Seq.xlsx-sheet-gene_exp bimodal NA NA NA NA GPL21412 Tetrahymena thermophila 5911 NA NA
GSE64854 GSE64854_cds_exp.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE63555 GSE63555_Gene_expression_cuffdiff_fpkm.txt.gz conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE50557 GSE50557_rnaseq-lbl1-Cuffdiff_gene_expression.txt.gz conservative NA NA NA NA GPL13977 Zea mays 4577 NA NA
GSE50557 GSE50557_rnaseq-lbl1-Cuffdiff_gene_expression.txt.gz conservative NA NA NA NA GPL15463 Zea mays 4577 NA NA
GSE92989 GSE92989_Drought_2_days.txt.gz conservative NA NA NA NA GPL13160 Oryza sativa 4530 NA NA
GSE90974 GSE90974_Cuffdiff_Gene_RbvRv_Global.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE74929 GSE74929_ANOVA_gene_rpkm.txt.gz-set-0 other NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE74929 GSE74929_ANOVA_gene_rpkm.txt.gz-set-1 other NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE79507 GSE79507_minipig.txt.gz bimodal NA NA NA NA GPL11429 Sus scrofa 9823 NA NA
GSE81100 GSE81100_old_ARSER_output.txt.gz bimodal NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE61336 GSE61336_results_167_vs_WTL.txt.gz bimodal NA anti-conservative 0.42 GPL19185 Burkholderia cenocepacia 95486 NA NA
GSE78878 GSE78878_30PvsN2P_score.txt.gz bimodal NA NA NA NA GPL15716 Caenorhabditis elegans 6239 NA NA
GSE85576 GSE85576_Supplementary_Table_1.xlsx-sheet-MagohMos2_vs_Control conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE84606 GSE84606_gene_exp.diff.gz bimodal NA NA NA NA GPL17639 Arabidopsis thaliana 3702 NA NA
GSE79286 GSE79286_CYC2vsWT_Conj-2hr_RNA-Seq.xlsx-sheet-C2vWT-2hr genes bimodal NA NA NA NA GPL21412 Tetrahymena thermophila 5911 NA NA
GSE64854 GSE64854_gene_exp.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE71284 GSE71284_control_WT2_WT3_C1_C2_vs_truncation_3kb1_3kb2_100kb1_100kb2_CUFFDIFF_gene_exp.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE59290 GSE59290_ANTI_isoform_exp.diff.txt.gz conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE54246 GSE54246_Control_vs._4_NQO_Tongue_gene_exp.xlsx.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE52367 GSE52367_Cuflinks_2338_2339.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE51847 GSE51847_Expression_table_LE-2_x_HR-3.txt.gz conservative NA NA NA NA GPL15914 Schistosoma mansoni 6183 NA NA
GSE92989 GSE92989_Drought_3_days.txt.gz conservative NA NA NA NA GPL13160 Oryza sativa 4530 NA NA
GSE90974 GSE90974_Cuffdiff_Gene_Rv_24v36.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE93870 GSE93870_processed_file.xlsx-sheet-293FT_ZIKV.Vs.293FT_Control.DES spiky NA anti-conservative 0.88 GPL18573 Homo sapiens 9606 NA NA
GSE93870 GSE93870_processed_file.xlsx-sheet-BJ_ZIKV.Vs.BJ_Control.DESeq_Ana spiky NA anti-conservative 0.96 GPL18573 Homo sapiens 9606 NA NA
GSE93870 GSE93870_processed_file.xlsx-sheet-CHME_ZIKV.Vs.CHME_Control.DESeq spiky NA anti-conservative 0.81 GPL18573 Homo sapiens 9606 NA NA
GSE93870 GSE93870_processed_file.xlsx-sheet-THP1_ZIKV.Vs.THP1_Control.DESeq spiky NA anti-conservative 0.48 GPL18573 Homo sapiens 9606 NA NA
GSE93870 GSE93870_processed_file.xlsx-sheet-ZIKV.Vs.Control.DESeq_Analysis_ spiky NA spiky NA GPL18573 Homo sapiens 9606 NA NA
GSE80597 GSE80597_Processed_data_cuffdiff_output.txt.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE80597 GSE80597_Processed_data_cuffdiff_output.txt.gz conservative NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE61336 GSE61336_results_167_vs_WTZ.txt.gz bimodal NA anti-conservative 0.41 GPL19185 Burkholderia cenocepacia 95486 NA NA
GSE83406 GSE83406_gene_exp.diff.gz conservative NA NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE78878 GSE78878_N2CvsN2P_score.txt.gz spiky NA NA NA NA GPL15716 Caenorhabditis elegans 6239 NA NA
GSE80301 GSE80301_col_rep1_mom1_gene_exp.diff.txt.gz conservative NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE79286 GSE79286_CYC2vsWT_Conj-3.5hr_RNA-Seq.xlsx-sheet-gene_exp bimodal NA NA NA NA GPL21412 Tetrahymena thermophila 5911 NA NA
GSE64854 GSE64854_isoform_exp.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE61033 GSE61033_DE_exonWT_vs_exonKOnoRN.txt.gz bimodal NA anti-conservative 0.71 GPL13112 Mus musculus 10090 NA NA
GSE64455 GSE64455_cuffdiff_out.txt.gz conservative NA NA NA NA GPL18480 Mus musculus 10090 NA NA
GSE66232 GSE66232_B-ALL_Cuffdiff_Trim33.1271_rep1.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE59290 GSE59290_MIR_isoform_exp.diff.txt.gz conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE57680 GSE57680_RPKM_luminal_epithelium.txt.gz conservative NA NA NA NA GPL18480 Mus musculus 10090 NA NA
GSE32038 GSE32038_tss_group_exp.diff.gz conservative NA NA NA NA GPL11203 Drosophila melanogaster 7227 NA NA
GSE90974 GSE90974_Cuffdiff_Gene_Rv_24v48.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE93206 GSE93206_Processed_data_files.xlsx-set-0 conservative NA NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE93206 GSE93206_Processed_data_files.xlsx-set-1 spiky NA NA NA NA GPL20301 Homo sapiens 9606 NA NA
GSE77037 GSE77037_gene_exp.diff.gz bimodal NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE61336 GSE61336_results_WTL_vs_WTZ.txt.gz conservative NA anti-conservative 0.99 GPL19185 Burkholderia cenocepacia 95486 NA NA
GSE76533 GSE76533_leaf.gene_exp.diff.gz conservative NA NA NA NA GPL15463 Zea mays 4577 NA NA
GSE83555 GSE83555_WT-KO-mm9-gene_exp.txt.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE80301 GSE80301_col_rep1_nrpe1_gene_exp.diff.txt.gz conservative NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE79286 GSE79286_CYC2vsWT_Conj-3hr_RNA-Seq.xlsx bimodal NA NA NA NA GPL21412 Tetrahymena thermophila 5911 NA NA
GSE64854 GSE64854_promoters.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE61033 GSE61033_DE_intronWT_vs_intronKOnoRN.txt.gz bimodal NA anti-conservative 0.86 GPL13112 Mus musculus 10090 NA NA
GSE57254 GSE57254_Control_CELF1KD_abundances.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE66232 GSE66232_B-ALL_Cuffdiff_Trim33.1271_rep2.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE52201 GSE52201_RNAseq_processed_data_L_D_siLSD1.txt.gz conservative NA NA NA NA GPL15433 Homo sapiens 9606 NA NA
GSE57680 GSE57680_RPKM_stroma.txt.gz conservative NA NA NA NA GPL18480 Mus musculus 10090 NA NA
GSE58360 GSE58360_Cebpa.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE50424 GSE50424_Adipose.tsv.gz conservative NA NA NA NA GPL10287 Rattus norvegicus 10116 NA NA
GSE52038 GSE52038_Supplementary-table-1-date11021.txt.gz bimodal NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE90974 GSE90974_Cuffdiff_Gene_Rv_36v48.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE76533 GSE76533_seedling.gene_exp.diff.gz conservative NA NA NA NA GPL15463 Zea mays 4577 NA NA
GSE80301 GSE80301_col_rep1_pial1pial2_gene_exp.diff.txt.gz conservative NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE64854 GSE64854_splicing.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE70544 GSE70544_Normoxia_vs_Hypoxia_Gencode_gene_exp.diff.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE58359 GSE58359_HOXA9.txt.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE50424 GSE50424_Liver.tsv.gz conservative NA NA NA NA GPL10287 Rattus norvegicus 10116 NA NA
GSE42381 GSE42381_gene_exp.diff.gz bimodal NA NA NA NA GPL16295 Rhodococcus opacus 37919 NA NA
GSE90974 GSE90974_Cuffdiff_Gene_Sb_24v36.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE80301 GSE80301_col_rep2_mom1_gene_exp.diff.txt.gz conservative NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE64854 GSE64854_tss_group_exp.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE70544 GSE70544_Normoxia_vs_Hypoxia_Rinn_gene_exp.diff.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE58379 GSE58379_RBM47_alternative_splicing.txt.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE54982 GSE54982_Differential_Gene_Expression_Summary.xlsx.gz-sheet-C1_WtE8.0_Vs_Wt10.0 bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE54982 GSE54982_Differential_Gene_Expression_Summary.xlsx.gz-sheet-C2_Wt_VS_ Tc E8.0 bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE54982 GSE54982_Differential_Gene_Expression_Summary.xlsx.gz-sheet-C3_Wt_VS_Tc_E10.0 bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE54982 GSE54982_Differential_Gene_Expression_Summary.xlsx.gz-sheet-C4_TcE8.0_VS_TcE10.0 bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE37111 GSE37111_clip.txt.gz conservative NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE37111 GSE37111_clip.txt.gz conservative NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE90974 GSE90974_Cuffdiff_Gene_Sb_24v48.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE90615 GSE90615_DifferentialExpression.xlsx-sheet-Sfrp2_12dP-MI_v Vehicle_12dP-MI other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE90615 GSE90615_DifferentialExpression.xlsx-sheet-1dP-MI_vs_Vehicle_12dP-MI uniform NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE90615 GSE90615_DifferentialExpression.xlsx-sheet-1dP-MI_vs_Sfrp2_12dP-MI uniform NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE80301 GSE80301_col_rep2_mom1pial2_gene_exp.diff.txt.gz conservative NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE71943 GSE71943_KO_vs_WT_diffGenes.txt.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE70544 GSE70544_Vehicle_vs_Cytokine_Gencode_gene_exp.diff.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE66716 GSE66716_Lim_et_al_14-3-3zKOWAT_Processed_data_Cuffdiff.xlsx conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE67674 GSE67674_RNA-seq_analysis_AADMSOvsAAGSK-J4.txt.gz bimodal NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE54984 GSE54984_Differential_Gene_Expression_Summary.xlsx.gz-sheet-ESCs_VS_EBDay4 bimodal NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE54984 GSE54984_Differential_Gene_Expression_Summary.xlsx.gz-sheet-ESCs_VS_EBDay4 bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE54984 GSE54984_Differential_Gene_Expression_Summary.xlsx.gz-sheet-EBDay4_ControlVSBrachyuryKD bimodal NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE54984 GSE54984_Differential_Gene_Expression_Summary.xlsx.gz-sheet-EBDay4_ControlVSBrachyuryKD bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE90974 GSE90974_Cuffdiff_Gene_Sb_36v48.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE80301 GSE80301_col_rep2_pial2_gene_exp.diff.txt.gz conservative NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE71281 GSE71281_G53_veh_vs_SAA_Th17_CuffDiff_Gene_Differential.txt.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE70544 GSE70544_Vehicle_vs_Cytokine_Rinn_gene_exp.diff.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE67554 GSE67554_TAG5_Cuffdiff_gene_differential_expression_testing.txt.gz bimodal NA NA NA NA GPL19989 Eucalyptus grandis 71139 NA NA
GSE98541 GSE98541_RPE1_diff_expression_WT_SAFA.xlsx conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE90974 GSE90974_Cuffdiff_Gene_SbvSv_24.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE76232 GSE76232_isoforms.diff_exp_ann_result.xls.gz conservative NA NA NA NA GPL15670 Ovis aries 9940 NA NA
GSE67554 GSE67554_ZG14_Cuffdiff_gene_differential_expression_testing.txt.gz bimodal NA NA NA NA GPL19989 Eucalyptus grandis 71139 NA NA
GSE61851 GSE61851_genelist-sortedbypadj.txt.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE44665 GSE44665_gene_exp.diff.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE90974 GSE90974_Cuffdiff_Gene_SbvSv_36.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE81100 GSE81100_youngARSER_output.txt.gz bimodal NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE76151 GSE76151_A1_isoform_exp.diff.gz conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE72917 GSE72917_DP1_WTvKO.txt.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE70860 GSE70860_DEaxons.csv.gz spiky NA anti-conservative 0.21 GPL19052 Rattus norvegicus 10116 NA NA
GSE68102 GSE68102_gene_exp.diff.gz conservative NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE63570 GSE63570_Rec_siRNA_RNA-seq.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE65542 GSE65542_pnky_kd.diff.gz bimodal NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE40948 GSE40948_MEF_vs_ESC_2replicates_expression.tsv.gz bimodal NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE40948 GSE40948_MEF_vs_ESC_2replicates_expression.tsv.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE90974 GSE90974_Cuffdiff_Gene_SbvSv_48.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE81123 GSE81123_Poplar_RNAseq_data.ods.txt.gz conservative NA NA NA NA GPL21868 Populus tremula x Populus alba 80863 NA NA
GSE71988 GSE71988_gene_exp.diff.gz conservative NA NA NA NA GPL9151 Bombyx mori 7091 NA NA
GSE76151 GSE76151_A2B1A1_isoform_exp.diff.gz conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE71609 GSE71609_2015_MZT.txt.gz-set-0 bimodal NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE71609 GSE71609_2015_MZT.txt.gz-set-1 conservative NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE71609 GSE71609_2015_MZT.txt.gz-set-2 conservative NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE71609 GSE71609_2015_MZT.txt.gz-set-3 bimodal NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE71609 GSE71609_2015_MZT.txt.gz-set-4 bimodal NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE69311 GSE69311_deseq_diff_genes.csv.gz bimodal NA anti-conservative 0.79 GPL18635 Mus musculus 10090 NA NA
GSE72917 GSE72917_DP2_WTvKO.txt.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE70860 GSE70860_DEsoma.csv.gz other NA other NA GPL19052 Rattus norvegicus 10116 NA NA
GSE65542 GSE65542_ptbp1_kd.diff.gz bimodal NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE58910 GSE58910_SenescentAstrocytesDEanalysis_v2.csv.gz bimodal NA anti-conservative 0.69 GPL11154 Homo sapiens 9606 NA NA
GSE44668 GSE44668_gene_exp_diff.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE90974 GSE90974_Cuffdiff_Gene_SbvSv_Global.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE76151 GSE76151_A2B1_isoform_exp.diff.gz conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE65142 GSE65142_HYBP.txt.gz bimodal NA NA NA NA GPL19675 Raphanus sativus 3726 NA NA
GSE76190 GSE76190_OtA8535_vs_OtA8538_gene_exp.diff.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE63838 GSE63838_cds_exp_diff_2D.txt.gz conservative NA NA NA NA GPL19491 Solanum pimpinellifolium 4084 NA NA
GSE72917 GSE72917_KO_DP1vDP2.txt.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE52153 GSE52153_wtDMSOvsczt-1DMSO.txt.gz bimodal NA NA NA NA GPL16164 Neurospora crassa 5141 NA NA
GSE40228 GSE40228_gene_exp.diff.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE90974 GSE90974_Cuffdiff_Gene_Sv_24v36.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE93021 GSE93021_DSP-TP_LL-YY_FPKM.xlsx-sheet-DSP-TP_VS_LL-YY conservative NA NA NA NA GPL11429 Sus scrofa 9823 NA NA
GSE93021 GSE93021_DSP-TP_LL-YY_FPKM.xlsx-sheet-DSP-TP conservative NA NA NA NA GPL11429 Sus scrofa 9823 NA NA
GSE93021 GSE93021_DSP-TP_LL-YY_FPKM.xlsx-sheet-LL-YY conservative NA NA NA NA GPL11429 Sus scrofa 9823 NA NA
GSE79680 GSE79680_Heat_shock_table.csv.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE76190 GSE76190_OtA8536_vs_OtA8539_gene_exp.diff.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE72917 GSE72917_WT_DP1vDP2.txt.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE69175 GSE69175_gene_exp.txt.gz conservative NA NA NA NA GPL15520 Homo sapiens 9606 NA NA
GSE60822 GSE60822_cuffdiff.control.ablation.tab.gz conservative NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE53789 GSE53789_GFP_FACS_x_GFP_LCM-not_significant.diff.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE51144 GSE51144_all_exons.txt.gz other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE98387 GSE98387_gene_exp.txt.gz other NA other NA GPL21493 Mus musculus 10090 NA NA
GSE90974 GSE90974_Cuffdiff_Gene_Sv_24v48.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE52911 GSE52911_gene_exp.txt.gz conservative NA NA NA NA GPL18025 Citrus maxima 37334 NA NA
GSE76683 GSE76683_shHOXA7gene_exp.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE79779 GSE79779_gene_exp.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE65142 GSE65142_YH.txt.gz bimodal NA NA NA NA GPL19675 Raphanus sativus 3726 NA NA
GSE76190 GSE76190_OtA8537_vs_OtA8540_gene_exp.diff.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE60822 GSE60822_cuffdiff.control.induction.tab.gz conservative NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE53789 GSE53789_GFP_FACS_x_WT_FACS-not_significant.diff.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE41487 GSE41487_ResultsContr123vsRas123Multiple.xls.gz-sheet-RawData Contr123 vs Ras123 conservative NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE90974 GSE90974_Cuffdiff_Gene_Sv_36v48.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE80237 GSE80237_Supplementary_Data_1.txt.gz bimodal NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE76682 GSE76682_EB_AM580gene_exp.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE75878 GSE75878_cds.diff.gz bimodal NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE65987 GSE65987_FPKM_for_MEFs.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE76190 GSE76190_OtA8538_vs_OtA8541_gene_exp.diff.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE60822 GSE60822_cuffdiff.induction.ablation.tab.gz conservative NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE53789 GSE53789_GFP_LCM_gt_GFP_FACS_gene_exp_with_zeros.diff.txt.gz other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE50203 GSE50203_gene_exp.diff.gz conservative NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE41487 GSE41487_ResultsContr123vsRas12Multiple.xls.gz-sheet-RawData Contr123 vs Ras12 conservative NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE90974 GSE90974_Cuffdiff_Gene_SvvRv_24.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE86323 GSE86323_gene_exp.diff.txt.gz conservative NA NA NA NA GPL15749 Bos taurus 9913 NA NA
GSE85308 GSE85308_gene_exp.diff.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE75878 GSE75878_cds_exp.diff.gz conservative NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE76190 GSE76190_OtA8539_vs_OtA8542_gene_exp.diff.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE71164 GSE71164_SCR-static_vs_SCR-FSS.tabular.txt.gz bimodal NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE53789 GSE53789_GFP_LCM_gt_WT_FACS_gene_exp_with_zeros.diff.txt.gz other NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE50203 GSE50203_isoform_exp.diff.gz conservative NA NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE56575 GSE56575_cds_exp.diff.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE41090 GSE41090_WT_vs_KO_full_genes.tab.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE39812 GSE39812_FT_result_transcript_summary.tsv.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE94967 GSE94967_cds_exp.diff_A_B_CDS.diff.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE90974 GSE90974_Cuffdiff_Gene_SvvRv_36.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE69205 GSE69205_gene_exp.txt.gz conservative NA NA NA NA GPL20238 Homo sapiens 9606 Coxsackievirus B2 (strain Ohio-1) 231473
GSE72820 GSE72820_MDA1N-1P_RPKM.xlsx.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE85308 GSE85308_processed_data.txt.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE75878 GSE75878_gene_exp.diff.gz conservative NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE76190 GSE76190_OtA8540_vs_OtA8543_gene_exp.diff.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE71164 GSE71164_SCR-static_vs_SH-EZH2-static.tabular.txt.gz conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE53789 GSE53789_GFP_LCM_x_GFP_FACS-not_significant.diff.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE56097 GSE56097_Cufflinks_CuffDiff_gene_exp.txt.gz conservative NA NA NA NA GPL17296 Cavia porcellus 10141 NA NA
GSE49097 GSE49097_BetweenGenotypes_gene_exp.diff.gz conservative NA NA NA NA GPL15008 Glycine max 3847 NA NA
GSE84158 GSE84158_gene_exp.diff.gz bimodal NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE94967 GSE94967_gene_exp.diff_A_B_GENE.diff.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE90974 GSE90974_Cuffdiff_Gene_SvvRv_48.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE62040 GSE62040_gene_exp.diff.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE72820 GSE72820_MDA27N-27P_RPKM.xlsx.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE75878 GSE75878_isoform_exp.diff.gz conservative NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE70068 GSE70068_GM_gene_exp.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE72560 GSE72560_Enteric_Glia.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE53789 GSE53789_GFP_LCM_x_WT_FACS-not_significant.diff.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE49097 GSE49097_CompareAll_gene_exp.diff.gz conservative NA NA NA NA GPL15008 Glycine max 3847 NA NA
GSE39812 GSE39812_TB_result_transcript_summary.tsv.txt.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE94967 GSE94967_isoform_exp.diff_A_B_ISOFORM.diff.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE90974 GSE90974_Cuffdiff_Gene_SvvRv_Global.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE77395 GSE77395_A_OE_air_vs_Col_air.diff.gz conservative NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE72820 GSE72820_MDA2N-2P_RPKM.xlsx.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE70815 GSE70815_gene_exp.diff.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE76992 GSE76992_GFP_vs_p16.txt.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE74868 GSE74868_ETS2_T72D_OE_Epi_RNAseq.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE60701 GSE60701_AL_R_vs_AL_L.diff_expressed_transcripts.tsv.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE49097 GSE49097_Within_A_gene_exp.diff.gz conservative NA NA NA NA GPL15008 Glycine max 3847 NA NA
GSE94967 GSE94967_tss_group_exp.diff_A_B_TSS.diff.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE90974 GSE90974_Cuffdiff_Transcript_Rb_24v36.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE77395 GSE77395_col_air_vs_ethylene.diff.gz bimodal NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE72820 GSE72820_MDA31N-31P_RPKM.xlsx.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE75833 GSE75833_DESeq-processed_FB.control_vs_FB.25mkM.4HT.txt.gz conservative NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE77256 GSE77256_Cuffdiff_Anagen_HFSCs.txt.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE70068 GSE70068_TNF_gene_exp.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE60701 GSE60701_ChL_R_vs_AL_R.diff_expressed_transcripts.tsv.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE49097 GSE49097_Within_B_gene_exp.diff.gz conservative NA NA NA NA GPL15008 Glycine max 3847 NA NA
GSE39605 GSE39605_All_KOvsWT_filtered_final.xlsx.gz-sheet-All_KOvsWT_filtered conservative NA other NA GPL9250 Mus musculus 10090 NA NA
GSE39652 GSE39652_20111201c2Day3_gene_exp.txt.gz bimodal NA NA NA NA GPL15103 Mus musculus 10090 NA NA
GSE39652 GSE39652_20111201c2Day3_gene_exp.txt.gz bimodal NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE90974 GSE90974_Cuffdiff_Transcript_Rb_24v48.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE87808 GSE87808_diffExp_Slc7a5_Cerebellum_allGenes.txt.gz spiky NA anti-conservative 0.83 GPL17021 Mus musculus 10090 NA NA
GSE79412 GSE79412_amiFPSa_gene_exp_diff.xlsx-sheet-Hoja1 conservative NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE73192 GSE73192_cds_chromosome_exp.diff.gz bimodal NA NA NA NA GPL20934 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 99287 NA NA
GSE72820 GSE72820_MDA33N-33P_RPKM.xlsx.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE84786 GSE84786_isoform_exp.xlsx-sheet-isoform_exp conservative NA NA NA NA GPL9185 Mus musculus 10090 NA NA
GSE84786 GSE84786_isoform_exp.xlsx-sheet-Fold change conservative NA NA NA NA GPL9185 Mus musculus 10090 NA NA
GSE75878 GSE75878_tss_group_exp.diff.gz conservative NA NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE77256 GSE77256_Cuffdiff_Telogen_HFSCs.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE70108 GSE70108_G263_CuffDiff_WTvsDDX5Tko.tabular.txt.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE62909 GSE62909_Differential_gene_exp.diff.gz bimodal NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE72178 GSE72178_gene_exp.diff.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE53789 GSE53789_WT_FACS_x_GFP_FACS-not_significant.diff.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE61031 GSE61031_DE_polyaWT_vs_polyaKO.txt.gz bimodal NA anti-conservative 0.84 GPL13112 Mus musculus 10090 NA NA
GSE60701 GSE60701_ChL_R_vs_ChL_L.diff_expressed_transcripts.tsv.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE49097 GSE49097_Within_WT_gene_exp.diff.gz conservative NA NA NA NA GPL15008 Glycine max 3847 NA NA
GSE57517 GSE57517_gene_exp.diff.gz conservative NA NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE56058 GSE56058_differentialExpressionGenes_RD19.txt.gz other NA NA NA NA GPL18445 Deinococcus deserti 310783 NA NA
GSE39652 GSE39652_20111201c2LZ_gene_exp.txt.gz conservative NA NA NA NA GPL15103 Mus musculus 10090 NA NA
GSE39652 GSE39652_20111201c2LZ_gene_exp.txt.gz conservative NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE83217 GSE83217_Processed_Matrix_FPKM.xlsx-sheet-siScramble_vs_siHdac4 conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE83217 GSE83217_Processed_Matrix_FPKM.xlsx-sheet-siScramble_vs_siBdnf conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE90974 GSE90974_Cuffdiff_Transcript_Rb_36v48.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE84308 GSE84308_RNA.txt.gz spiky NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE76287 GSE76287_rosettes_col0vdko_tair.txt.gz conservative NA NA NA NA GPL19080 Arabidopsis thaliana 3702 NA NA
GSE72820 GSE72820_MDA34N-34P_RPKM.xlsx.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE86077 GSE86077_N2_EVvs28_D4.diff.gz conservative NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE77256 GSE77256_Cuffdiff_all_HFSCs.txt.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE72830 GSE72830_gene_exp.diff.gz bimodal NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE70108 GSE70108_G340_CuffDiff_WTvsRORgko.tabular.txt.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE70068 GSE70068_UT_gene_exp.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE53789 GSE53789_WT_FACS_x_GFP_LCM-not_significant.diff.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE39652 GSE39652_20111201c2Pach_gene_exp.txt.gz conservative NA NA NA NA GPL15103 Mus musculus 10090 NA NA
GSE39652 GSE39652_20111201c2Pach_gene_exp.txt.gz conservative NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE90974 GSE90974_Cuffdiff_Transcript_RbvRv_24.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE76287 GSE76287_seedling_col0vdko_tair.txt.gz bimodal NA NA NA NA GPL19080 Arabidopsis thaliana 3702 NA NA
GSE72820 GSE72820_MDA3N-3P_RPKM.xlsx.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE86077 GSE86077_glp-1_EVvs28_D4.diff.gz conservative NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE84798 GSE84798_gene_exp.diff.gz conservative NA NA NA NA GPL15579 Brassica napus 3708 NA NA
GSE80972 GSE80972_frm_gene_exp.diff.txt.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE70785 GSE70785_gene_exp.diff.gz conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE72830 GSE72830_tss_group_exp.diff.gz conservative NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE72787 GSE72787_deseq2_closed_vs_open.tsv.gz spiky NA NA NA NA GPL10287 Rattus norvegicus 10116 NA NA
GSE69855 GSE69855_gene_exp_ResvResVag.txt.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE53789 GSE53789_gene_exp.diff.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE52080 GSE52080_processed_data.txt.gz bimodal NA NA NA NA GPL9185 Mus musculus 10090 NA NA
GSE55596 GSE55596_LOLOdiff_nonovel.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE39652 GSE39652_20111201c2PreMeiotic_gene_exp.txt.gz conservative NA NA NA NA GPL15103 Mus musculus 10090 NA NA
GSE39652 GSE39652_20111201c2PreMeiotic_gene_exp.txt.gz conservative NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE97525 GSE97525_Dm_AKHR_F2_RNA-seq.xlsx-sheet-PP vs WT other NA other NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE97525 GSE97525_Dm_AKHR_F2_RNA-seq.xlsx-sheet-PM vs WT other NA other NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE97525 GSE97525_Dm_AKHR_F2_RNA-seq.xlsx-sheet-PP vs PM other NA other NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE90974 GSE90974_Cuffdiff_Transcript_RbvRv_36.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE83601 GSE83601_All_genes_in_controls_and_PTSD.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE84529 GSE84529_Paired_comparison_of_three_sections_Cuffdiff.xlsx-sheet-Comparison_0-5_mm_vs_15-20_mm bimodal NA NA NA NA GPL22164 Postia placenta 104341 NA NA
GSE84529 GSE84529_Paired_comparison_of_three_sections_Cuffdiff.xlsx-sheet-Comparison_0-5_mm_vs_30-35_mm bimodal NA NA NA NA GPL22164 Postia placenta 104341 NA NA
GSE84529 GSE84529_Paired_comparison_of_three_sections_Cuffdiff.xlsx-sheet-Comparison_30-35_mm_vs_15-20_mm conservative NA NA NA NA GPL22164 Postia placenta 104341 NA NA
GSE72947 GSE72947_Dm_sir2_RNA-seq.xlsx-sheet-Analyzed Genes conservative NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE64747 GSE64747_deseq_comp_DMSO_minus_TEX_vs_compound59_minus_TEX_with_annot_and_counts.txt.gz conservative NA NA NA NA GPL19006 Staphylococcus aureus 1280 NA NA
GSE72321 GSE72321_annotated_diffana_6-OHDA-6-OHDA_En.xlsx conservative NA other NA GPL13112 Mus musculus 10090 NA NA
GSE69855 GSE69855_gene_exp_ResvSham.txt.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE55596 GSE55596_alldiff_nonovel.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE85627 GSE85627_mDUX-mESC.xlsx.gz-sheet-Transient spiky NA other NA GPL17021 Mus musculus 10090 NA NA
GSE90974 GSE90974_Cuffdiff_Transcript_RbvRv_48.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE81191 GSE81191_Cuffdiff_Isoform.txt.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE86521 GSE86521_DESeq_out_KO_vs_WT.txt.gz bimodal NA anti-conservative 0.74 GPL13112 Mus musculus 10090 NA NA
GSE72321 GSE72321_annotated_diffana_gain-of-function_En1-ipsi-contra.xlsx conservative NA spiky NA GPL13112 Mus musculus 10090 NA NA
GSE71153 GSE71153_projectLindholmPerry_USDA0001AL_master_list.txt.gz spiky NA NA NA NA GPL11153 Bos taurus 9913 NA NA
GSE69900 GSE69900_control-CBD16H.txt.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE51119 GSE51119_IBH1KD_vs_Col_gene_exp.diff.txt.gz conservative NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE90974 GSE90974_Cuffdiff_Transcript_RbvRv_Global.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE81191 GSE81191_Cuffdiff_transcript.txt.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE76487 GSE76487_shMBNL1_gene_exp_diff.txt.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE72321 GSE72321_annotated_diffana_loss-of-function_En1LacZ-WT.xlsx conservative NA spiky NA GPL13112 Mus musculus 10090 NA NA
GSE69900 GSE69900_control-tamoxifen48H.txt.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE62633 GSE62633_Differential_expression_table.txt.gz conservative NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE46046 GSE46046_GenesTable.txt.gz spiky NA anti-conservative 0.93 GPL16133 Gallus gallus 9031 NA NA
GSE51119 GSE51119_IBH1ox_vs_Col_gene_exp.diff.txt.gz conservative NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE40218 GSE40218_processed_DESeq.txt.gz bimodal NA anti-conservative 0.89 GPL11154 Homo sapiens 9606 NA NA
GSE40218 GSE40218_processed_DESeq.txt.gz bimodal NA anti-conservative 0.89 GPL13112 Mus musculus 10090 NA NA
GSE90974 GSE90974_Cuffdiff_Transcript_Rv_24v36.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE87532 GSE87532_gene_exp.diff.name.txt.gz bimodal NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE84370 GSE84370_APC_0h_vs_1h_gene_exp.diff.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE86248 GSE86248_shControl-vs-shPaf1-gene_exp.diff.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE60691 GSE60691_processed_data_aso_wild_type.txt.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE72341 GSE72341_DEseq_results.xlsx bimodal NA spiky NA GPL9185 Mus musculus 10090 NA NA
GSE62760 GSE62760_Acute_Cuffdiff_DGE.txt.gz bimodal NA NA NA NA GPL14844 Rattus norvegicus 10116 NA NA
GSE59781 GSE59781_gene_exp.diff.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE61566 GSE61566_cds.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE51119 GSE51119_bHLH159KD_vs_Col_gene_exp.diff.txt.gz conservative NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE36866 GSE36866_gene_exp.diff.gz conservative NA NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE97258 GSE97258_differential_expression.xls.gz-sheet-Sheet1 bimodal NA NA NA NA GPL13396 Arabidopsis thaliana 3702 NA NA
GSE97258 GSE97258_differential_expression.xls.gz-sheet-Sheet1 bimodal NA NA NA NA GPL16033 Arabidopsis thaliana 3702 NA NA
GSE90974 GSE90974_Cuffdiff_Transcript_Rv_24v48.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE84370 GSE84370_APC_0h_vs_2h_gene_exp.diff.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE76396 GSE76396_isoform_exp.diff.gz conservative NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE86248 GSE86248_shControl-vs-shPhf5a-gene_exp_1_.diff.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE69556 GSE69556_cds_exp.diff.gz bimodal NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE60691 GSE60691_processed_data_krkr_sumo_mut.txt.gz bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE62760 GSE62760_Chronic_Cuffdiff_DGE.txt.gz bimodal NA NA NA NA GPL14844 Rattus norvegicus 10116 NA NA
GSE51119 GSE51119_bHLH159ox_vs_Col_gene_exp.diff.txt.gz conservative NA NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-0 bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-0 bimodal NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-1 bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-1 bimodal NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-2 bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-2 bimodal NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-3 bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-3 bimodal NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-4 conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-4 conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-5 bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-5 bimodal NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-6 bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-6 bimodal NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-7 bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-7 bimodal NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-8 bimodal NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE49581 GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-8 bimodal NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE49587 GSE49587_L2_L3P1_2_DEUtable.txt.gz other NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE98650 GSE98650_mb1_hdac3_cuffdiff_out.txt.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE90974 GSE90974_Cuffdiff_Transcript_Rv_36v48.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE93866 GSE93866_IDOE_GENE_EXPRESSION.xlsx conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE70699 GSE70699_gene_exp.diff.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE68460 GSE68460_WSVSBS_gene_diff.xls.gz-sheet-Sheet1 conservative NA NA NA NA GPL16133 Gallus gallus 9031 NA NA
GSE56122 GSE56122_IFN-gene_exp.diff.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE63884 GSE63884_gene_exp.diff_cenpk_imx372_aerobic.txt.gz uniform NA NA NA NA GPL17342 Saccharomyces cerevisiae 4932 NA NA
GSE61566 GSE61566_cds_exp.diff.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE46502 GSE46502_diff_gene_exp_PR_all.xlsx.gz-sheet-gene_exp.diff conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE49587 GSE49587_L312hr_L3P1_2_DEUtable.txt.gz other NA NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE90974 GSE90974_Cuffdiff_Transcript_Sb_24v36.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE95006 GSE95006_RNA-seq_Summary.xls.gz-sheet-Trip_delta_vs_J-set-0 other NA NA NA NA GPL23077 Helicobacter pylori J99 85963 NA NA
GSE95006 GSE95006_RNA-seq_Summary.xls.gz-sheet-Trip_delta_vs_J-set-1 other NA NA NA NA GPL23077 Helicobacter pylori J99 85963 NA NA
GSE72712 GSE72712_ESCd_40-70_over_ESCd_lt40.cuffdiff.xlsx-sheet-EST-d_40-70_over_EST-d_lt40 conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE65337 GSE65337_Nfix_KO_vs_WT_gene_exp.diff.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE68460 GSE68460_gene_exp.xls.gz-sheet-Sheet1 conservative NA NA NA NA GPL16133 Gallus gallus 9031 NA NA
GSE65039 GSE65039_gene_exp1.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE63226 GSE63226_WRR+vsWRR-.xls.gz conservative NA NA NA NA GPL13797 Gallus gallus 9031 NA NA
GSE61566 GSE61566_gene_exp.diff.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE50156 GSE50156_WT_36oC_15min_AND_WT_24oC.txt.gz conservative NA NA NA NA GPL13988 Schizosaccharomyces pombe 4896 NA NA
GSE47062 GSE47062_KO_vs_WT.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE90974 GSE90974_Cuffdiff_Transcript_Sb_24v48.txt.gz conservative NA NA NA NA GPL22761 Aedes aegypti 7159 NA NA
GSE72712 GSE72712_ESCd_40-70_over_ESCu.cuffdiff.xlsx-sheet-EST-d_40-70_over_EST-u.cuffdiff conservative NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE77304 GSE77304_gene_exp.diff.gz conservative NA NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE78506 GSE78506_dmso_vs_ca_24Hour_geneExp.diff.gz bimodal NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE66547 GSE66547_20150828-oocyteMut_vs_oocyteWt-deResults.xlsx-sheet-Genes conservative NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE56122 GSE56122_LPS-gene_exp.diff.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE50156 GSE50156_mas5D_AND_WT_24oC.txt.gz conservative NA NA NA NA GPL13988 Schizosaccharomyces pombe 4896 NA NA
GSE37703 GSE37703_hiseq_cuffdiff_cds_exp.diff.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE37703 GSE37703_hiseq_cuffdiff_cds_exp.diff.gz bimodal NA NA NA NA GPL15520 Homo sapiens 9606 NA NA
GSE37703 GSE37703_hiseq_cuffdiff_cds.diff.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE37703 GSE37703_hiseq_cuffdiff_cds.diff.gz bimodal NA NA NA NA GPL15520 Homo sapiens 9606 NA NA
GSE37703 GSE37703_hiseq_cuffdiff_gene_exp.diff.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE37703 GSE37703_hiseq_cuffdiff_gene_exp.diff.gz bimodal NA NA NA NA GPL15520 Homo sapiens 9606 NA NA
GSE37703 GSE37703_hiseq_cuffdiff_isoform_exp.diff.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE37703 GSE37703_hiseq_cuffdiff_isoform_exp.diff.gz bimodal NA NA NA NA GPL15520 Homo sapiens 9606 NA NA
GSE37703 GSE37703_hiseq_cuffdiff_promoters.diff.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE37703 GSE37703_hiseq_cuffdiff_promoters.diff.gz bimodal NA NA NA NA GPL15520 Homo sapiens 9606 NA NA
GSE37703 GSE37703_hiseq_cuffdiff_splicing.diff.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE37703 GSE37703_hiseq_cuffdiff_splicing.diff.gz bimodal NA NA NA NA GPL15520 Homo sapiens 9606 NA NA
GSE37703 GSE37703_hiseq_cuffdiff_tss_group_exp.diff.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE37703 GSE37703_hiseq_cuffdiff_tss_group_exp.diff.gz bimodal NA NA NA NA GPL15520 Homo sapiens 9606 NA NA
GSE37703 GSE37703_miseq_cuffdiff_cds_exp.diff.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE37703 GSE37703_miseq_cuffdiff_cds_exp.diff.gz bimodal NA NA NA NA GPL15520 Homo sapiens 9606 NA NA
GSE37703 GSE37703_miseq_cuffdiff_cds.diff.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE37703 GSE37703_miseq_cuffdiff_cds.diff.gz bimodal NA NA NA NA GPL15520 Homo sapiens 9606 NA NA
GSE37703 GSE37703_miseq_cuffdiff_gene_exp.diff.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE37703 GSE37703_miseq_cuffdiff_gene_exp.diff.gz bimodal NA NA NA NA GPL15520 Homo sapiens 9606 NA NA
GSE37703 GSE37703_miseq_cuffdiff_isoform_exp.diff.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE37703 GSE37703_miseq_cuffdiff_isoform_exp.diff.gz bimodal NA NA NA NA GPL15520 Homo sapiens 9606 NA NA
GSE37703 GSE37703_miseq_cuffdiff_promoters.diff.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE37703 GSE37703_miseq_cuffdiff_promoters.diff.gz bimodal NA NA NA NA GPL15520 Homo sapiens 9606 NA NA
GSE37703 GSE37703_miseq_cuffdiff_splicing.diff.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE37703 GSE37703_miseq_cuffdiff_splicing.diff.gz conservative NA NA NA NA GPL15520 Homo sapiens 9606 NA NA
GSE37703 GSE37703_miseq_cuffdiff_tss_group_exp.diff.gz bimodal NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE37703 GSE37703_miseq_cuffdiff_tss_group_exp.diff.gz bimodal NA NA NA NA GPL15520 Homo sapiens 9606 NA NA
GSE40187 GSE40187_gene_exp_diff_Control_NXD30001_fromtophat120_cufflinks102_c0_081612.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE40187 GSE40187_gene_exp_diff_Control_NXD30001_fromtophat120_cufflinks102_c0_081612.txt.gz conservative NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE40187 GSE40187_gene_exp_diff_MG1_MG2_fromtophat120_cufflinks102_c0_081612.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE40187 GSE40187_gene_exp_diff_MG1_MG2_fromtophat120_cufflinks102_c0_081612.txt.gz conservative NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE44233 GSE44233_processed_data.txt.gz spiky NA anti-conservative 0.72 GPL14875 Danio rerio 7955 NA NA
GSE44233 GSE44233_processed_data.txt.gz spiky NA anti-conservative 0.72 GPL9319 Danio rerio 7955 NA NA
GSE50198 GSE50198_Tet2kd_vs_v6.5_DESeq_results.txt.gz-set-0 bimodal NA anti-conservative 0.66 GPL10010 Mus musculus 10090 NA NA
GSE50198 GSE50198_Tet2kd_vs_v6.5_DESeq_results.txt.gz-set-0 bimodal NA anti-conservative 0.66 GPL14602 Mus musculus 10090 NA NA
GSE58052 GSE58052_N.winogradskyi_co-culture_over_single-culture.txt.gz spiky NA NA NA NA GPL18736 Nitrosomonas europaea 915 NA NA
GSE58052 GSE58052_N.winogradskyi_co-culture_over_single-culture.txt.gz spiky NA NA NA NA GPL18737 Nitrobacter winogradskyi 913 Nitrosomonas europaea 915
GSE58052 GSE58052_N.winogradskyi_co-culture_over_single-culture.txt.gz spiky NA NA NA NA GPL18738 Nitrobacter winogradskyi 913 Nitrosomonas europaea 915
GSE59705 GSE59705_DEXseqresultstable.txt.gz other NA NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE59705 GSE59705_DEXseqresultstable.txt.gz other NA NA NA NA GPL13776 Caenorhabditis elegans 6239 NA NA
GSE63161 GSE63161_diff-Gene-list.txt.gz spiky NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE63161 GSE63161_diff-Gene-list.txt.gz spiky NA NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE66767 GSE66767_CD34_cord_blood.EET.txt.gz spiky NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE66767 GSE66767_CD34_cord_blood.EET.txt.gz spiky NA NA NA NA GPL9052 Homo sapiens 9606 NA NA
GSE66767 GSE66767_U937.EET.txt.gz spiky NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE66767 GSE66767_U937.EET.txt.gz spiky NA NA NA NA GPL9052 Homo sapiens 9606 NA NA
GSE67654 GSE67654_RNA-seq.xlsx.gz-sheet-Sheet1-set-0 other NA NA NA NA GPL20002 Solanum pimpinellifolium 4084 NA NA
GSE67654 GSE67654_RNA-seq.xlsx.gz-sheet-Sheet1-set-0 other NA NA NA NA GPL20003 Solanum chilense 4083 NA NA
GSE67654 GSE67654_RNA-seq.xlsx.gz-sheet-Sheet1-set-1 other NA NA NA NA GPL20002 Solanum pimpinellifolium 4084 NA NA
GSE67654 GSE67654_RNA-seq.xlsx.gz-sheet-Sheet1-set-1 other NA NA NA NA GPL20003 Solanum chilense 4083 NA NA
GSE68176 GSE68176_Camfl1.gene_exp.diff.gz spiky NA NA NA NA GPL20096 Camponotus castaneus 105051 Ophiocordyceps unilateralis 268505
GSE68176 GSE68176_Camfl1.gene_exp.diff.gz spiky NA NA NA NA GPL20097 Camponotus castaneus 105051 Ophiocordyceps unilateralis 268505
GSE68176 GSE68176_Camfl1.gene_exp.diff.gz spiky NA NA NA NA GPL20098 Ophiocordyceps unilateralis 268505 NA NA
GSE72860 GSE72860_RNA-seq_log2fdc.txt.gz spiky NA anti-conservative 0.64 GPL19057 Mus musculus 10090 NA NA
GSE72860 GSE72860_RNA-seq_log2fdc.txt.gz spiky NA anti-conservative 0.64 GPL9250 Mus musculus 10090 NA NA
GSE72860 GSE72860_RRBS_CpG_methylation_call.txt.gz bimodal NA NA NA NA GPL19057 Mus musculus 10090 NA NA
GSE72860 GSE72860_RRBS_CpG_methylation_call.txt.gz bimodal NA NA NA NA GPL9250 Mus musculus 10090 NA NA
GSE78711 GSE78711_gene.exp.all.txt.gz spiky NA NA NA NA GPL15520 Homo sapiens 9606 NA NA
GSE78711 GSE78711_gene.exp.all.txt.gz spiky NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE84875 GSE84875_human_gene_exp.diff.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE84875 GSE84875_human_gene_exp.diff.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE84875 GSE84875_mouse_gene_exp.diff.txt.gz conservative NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE84875 GSE84875_mouse_gene_exp.diff.txt.gz conservative NA NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE86239 GSE86239_ETS2shRNA_gene_exp.diff.gz spiky NA NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE86239 GSE86239_ETS2shRNA_gene_exp.diff.gz spiky NA NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE91001 GSE91001_Galaxy255-AveragedPerCRNAseqData.tabular.txt.gz spiky NA NA NA NA GPL14548 Escherichia coli 562 NA NA
GSE91001 GSE91001_Galaxy255-AveragedPerCRNAseqData.tabular.txt.gz spiky NA NA NA NA GPL20262 Escherichia coli O127:H6 str. E2348/69 574521 NA NA
GSE91001 GSE91001_PerC_RNAseq_averageddata.xls.gz-sheet-diffexp_rerun spiky NA NA NA NA GPL14548 Escherichia coli 562 NA NA
GSE91001 GSE91001_PerC_RNAseq_averageddata.xls.gz-sheet-diffexp_rerun spiky NA NA NA NA GPL20262 Escherichia coli O127:H6 str. E2348/69 574521 NA NA
GSE83736 GSE83736_DESeq2.Vav.KO.C_vs_Vav.WT.C.txt.gz anti-conservative 0.52 anti-conservative 0.30 GPL13112 Mus musculus 10090 NA NA
GSE63707 GSE63707_DEXSeqResults_AretIR_03d_vs_IFMWT_03d.txt.gz anti-conservative 0.67 NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE51645 GSE51645_DE_processed_data.txt.gz anti-conservative 0.76 NA NA NA GPL13821 Saccharomyces cerevisiae 4932 NA NA
GSE51645 GSE51645_DE_processed_data.txt.gz anti-conservative 0.76 NA NA NA GPL9377 Saccharomyces cerevisiae 4932 NA NA
GSE97406 GSE97406_CRP_K100Q_vs_CRP_Control.csv.gz-set-0 anti-conservative 0.01 NA NA NA GPL16085 Escherichia coli 562 NA NA
GSE97406 GSE97406_CRP_K100Q_vs_CRP_Control.csv.gz-set-1 anti-conservative 0.02 NA NA NA GPL16085 Escherichia coli 562 NA NA
GSE83736 GSE83736_DESeq2.Vav.WTvsKO.StimulatedInteractions.txt.gz anti-conservative 0.56 anti-conservative 0.32 GPL13112 Mus musculus 10090 NA NA
GSE63707 GSE63707_DEXSeqResults_AretIR_03d_vs_salm_ko.txt.gz anti-conservative 0.59 NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_mTECs_vs_sp-DCs.csv.gz anti-conservative 0.29 anti-conservative 0.13 GPL13112 Mus musculus 10090 NA NA
GSE70290 GSE70290_PV_Transcripts.txt.gz anti-conservative 0.01 NA NA NA GPL17639 Arabidopsis thaliana 3702 NA NA
GSE63707 GSE63707_DEXSeqResults_AretIR_30h_vs_IFMWT_30h.txt.gz anti-conservative 0.69 NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_mTECs_vs_t-DCs.csv.gz anti-conservative 0.27 anti-conservative 0.11 GPL13112 Mus musculus 10090 NA NA
GSE87365 GSE87365_gene_exp_diff_fc_yes_reg_Fetal_stem_cells_and_FACS_sort_vs_Fetal_stem_cells.xls.gz anti-conservative 0.00 NA NA NA GPL21290 Homo sapiens 9606 NA NA
GSE81237 GSE81237_DE_RNAseqseq_analysis_DESeq_TTP-AAvsGFP.csv.gz anti-conservative 0.66 anti-conservative 0.59 GPL17021 Mus musculus 10090 NA NA
GSE67360 GSE67360_differentially_expressed_transcripts.txt.gz anti-conservative 0.00 NA NA NA GPL16133 Gallus gallus 9031 NA NA
GSE63707 GSE63707_DEXSeqResults_AretIR_72h_vs_IFMWT_72h.txt.gz anti-conservative 0.67 NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE97406 GSE97406_CRP_K100R_vs_CRP_Control.csv.gz-set-0 anti-conservative 0.01 NA NA NA GPL16085 Escherichia coli 562 NA NA
GSE97406 GSE97406_CRP_K100R_vs_CRP_Control.csv.gz-set-1 anti-conservative 0.02 NA NA NA GPL16085 Escherichia coli 562 NA NA
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_sp-DCs_vs_mTECs.csv.gz anti-conservative 0.29 anti-conservative 0.13 GPL13112 Mus musculus 10090 NA NA
GSE81237 GSE81237_DE_RNAseqseq_analysis_DESeq_TTP-AAvsTTP.csv.gz anti-conservative 0.56 anti-conservative 0.48 GPL17021 Mus musculus 10090 NA NA
GSE77077 GSE77077_HT_data_36hpf.xls.gz anti-conservative 0.43 NA NA NA GPL9319 Danio rerio 7955 NA NA
GSE59335 GSE59335_exons_sig_anno_total.txt.gz anti-conservative 0.00 NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE59335 GSE59335_exons_sig_anno_total.txt.gz anti-conservative 0.00 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE33736 GSE33736_HAmCqG0_G8expression.txt.gz anti-conservative 0.60 NA NA NA GPL14891 Culex quinquefasciatus 7176 NA NA
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_sp-DCs_vs_t-DCs.csv.gz anti-conservative 0.52 anti-conservative 0.22 GPL13112 Mus musculus 10090 NA NA
GSE87706 GSE87706_SM_vs_RODI.txt.gz anti-conservative 0.27 anti-conservative 0.13 GPL17452 Staphylococcus aureus 1280 NA NA
GSE87365 GSE87365_gene_exp_diff_fc_yes_reg_Fetal_stem_cells_vs_Fetal_myotubes.xls.gz anti-conservative 0.00 NA NA NA GPL21290 Homo sapiens 9606 NA NA
GSE81237 GSE81237_DE_RNAseqseq_analysis_DESeq_TTPvsGFP.csv.gz anti-conservative 0.75 anti-conservative 0.69 GPL17021 Mus musculus 10090 NA NA
GSE97406 GSE97406_CRP_WT_vs_CRP_Control.csv.gz-set-0 anti-conservative 0.01 NA NA NA GPL16085 Escherichia coli 562 NA NA
GSE97406 GSE97406_CRP_WT_vs_CRP_Control.csv.gz-set-1 anti-conservative 0.02 NA NA NA GPL16085 Escherichia coli 562 NA NA
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_t-DCs_vs_mTECs.csv.gz anti-conservative 0.27 anti-conservative 0.11 GPL13112 Mus musculus 10090 NA NA
GSE87495 GSE87495_results_dds_gencode22.csv.gz anti-conservative 0.34 anti-conservative 0.15 GPL16791 Homo sapiens 9606 NA NA
GSE57397 GSE57397_degexp.KO-REC-REP1-RNA.vs.KO-HS-REP1-RNA.output_score.txt.gz anti-conservative 0.38 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE63707 GSE63707_DEXSeqResults_salm_ko_vs_IFMWT_03d.txt.gz anti-conservative 0.65 NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_t-DCs_vs_sp-DCs.csv.gz anti-conservative 0.52 anti-conservative 0.22 GPL13112 Mus musculus 10090 NA NA
GSE57397 GSE57397_degexp.KO-REC-REP2-RNA.vs.KO-HS-REP2-RNA.output_score.txt.gz anti-conservative 0.39 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE57397 GSE57397_degexp.WT-REC-REP1-RNA.vs.WT-HS-REP1-RNA.output_score.txt.gz anti-conservative 0.34 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48812 GSE48812_24h_LNCAP_SFN.diff.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48812 GSE48812_24h_LNCAP_SFN.diff.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48812 GSE48812_24h_LNCAP_SFN.diff.txt.gz-set-2 anti-conservative 0.00 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE57397 GSE57397_degexp.WT-REC-REP2-RNA.vs.WT-HS-REP2-RNA.output_score.txt.gz anti-conservative 0.37 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48812 GSE48812_24h_LNCAPvsPC3.diff.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48812 GSE48812_24h_LNCAPvsPC3.diff.txt.gz-set-1 anti-conservative 0.01 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48812 GSE48812_24h_LNCAPvsPC3.diff.txt.gz-set-2 anti-conservative 0.01 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48812 GSE48812_24h_PC3_SFN.diff.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48812 GSE48812_24h_PC3_SFN.diff.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48812 GSE48812_24h_PC3_SFN.diff.txt.gz-set-2 anti-conservative 0.01 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE77044 GSE77044_comparison2.xls.gz anti-conservative 0.69 anti-conservative 0.66 GPL21354 Entamoeba histolytica HM-1:IMSS 294381 NA NA
GSE58053 GSE58053_25mm-over-0mm.txt.gz anti-conservative 0.56 NA NA NA GPL18739 Nitrobacter winogradskyi 913 NA NA
GSE48812 GSE48812_24h_PREC_SFN.diff.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48812 GSE48812_24h_PREC_SFN.diff.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48812 GSE48812_24h_PREC_SFN.diff.txt.gz-set-2 anti-conservative 0.01 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE43650 GSE43650_gene_exp_diff_sig.txt.gz anti-conservative 0.00 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE63141 GSE63141_eTMglc_gene_exp.diff.gz anti-conservative 0.95 NA NA NA GPL19399 Thermotoga maritima MSB8 243274 NA NA
GSE58053 GSE58053_25mm-over-1mm.txt.gz anti-conservative 0.68 NA NA NA GPL18739 Nitrobacter winogradskyi 913 NA NA
GSE48812 GSE48812_24h_PRECvsLNCAP.diff.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48812 GSE48812_24h_PRECvsLNCAP.diff.txt.gz-set-1 anti-conservative 0.01 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48812 GSE48812_24h_PRECvsLNCAP.diff.txt.gz-set-2 anti-conservative 0.01 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE63141 GSE63141_eTMgly_gene_exp.diff.gz anti-conservative 0.78 NA NA NA GPL19399 Thermotoga maritima MSB8 243274 NA NA
GSE48812 GSE48812_24h_PRECvsPC3.diff.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48812 GSE48812_24h_PRECvsPC3.diff.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48812 GSE48812_24h_PRECvsPC3.diff.txt.gz-set-2 anti-conservative 0.01 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE51037 GSE51037_Untreated_Nitrate_Processed_CunninghamBussel.xlsx.gz anti-conservative 0.90 NA NA NA GPL17280 Mycobacterium tuberculosis H37Rv 83332 NA NA
GSE79830 GSE79830_Sp2_Wdr70del_vs_Sp1_Wt.Differential_analysis_results.txt.gz anti-conservative 0.72 NA NA NA GPL17225 Schizosaccharomyces pombe 4896 NA NA
GSE56346 GSE56346_wtNplus_vs_wtNminus_DESeq_output.txt.gz anti-conservative 0.36 anti-conservative 0.23 GPL18499 Phaeodactylum tricornutum 2850 NA NA
GSE48812 GSE48812_6h_LNCAP_SFN.diff.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48812 GSE48812_6h_LNCAP_SFN.diff.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48812 GSE48812_6h_LNCAP_SFN.diff.txt.gz-set-2 anti-conservative 0.01 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE50708 GSE50708_DE_result.txt.gz anti-conservative 0.32 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE48812 GSE48812_6h_LNCAPvsPC3.diff.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48812 GSE48812_6h_LNCAPvsPC3.diff.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48812 GSE48812_6h_LNCAPvsPC3.diff.txt.gz-set-2 anti-conservative 0.01 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE43143 GSE43143_tooth_FPKM_DE.txt.gz-set-0 anti-conservative 0.65 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE43143 GSE43143_tooth_FPKM_DE.txt.gz-set-1 anti-conservative 0.99 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE43143 GSE43143_tooth_FPKM_DE.txt.gz-set-2 anti-conservative 0.82 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE45788 GSE45788_S72_2_RefII_S72_1_Emf_exp.cuff.gz anti-conservative 0.83 NA NA NA GPL16962 Enterococcus faecalis 1351 NA NA
GSE48812 GSE48812_6h_PC3_SFN.diff.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48812 GSE48812_6h_PC3_SFN.diff.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48812 GSE48812_6h_PC3_SFN.diff.txt.gz-set-2 anti-conservative 0.01 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE99944 GSE99944_Digo_expression_SD-T50nM_SD-Ctrl.csv.gz anti-conservative 0.48 anti-conservative 0.34 GPL11154 Homo sapiens 9606 NA NA
GSE83218 GSE83218_HSC.txt.gz anti-conservative 0.88 anti-conservative 0.77 GPL17021 Mus musculus 10090 NA NA
GSE48812 GSE48812_6h_PREC_SFN.diff.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48812 GSE48812_6h_PREC_SFN.diff.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48812 GSE48812_6h_PREC_SFN.diff.txt.gz-set-2 anti-conservative 0.01 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE99944 GSE99944_Digo_expression_results_significatif.xlsx-sheet-padj<=0.05 UP anti-conservative 0.00 anti-conservative 0.00 GPL11154 Homo sapiens 9606 NA NA
GSE99944 GSE99944_Digo_expression_results_significatif.xlsx-sheet-padj<=0.05 DOWN anti-conservative 0.00 anti-conservative 0.00 GPL11154 Homo sapiens 9606 NA NA
GSE99944 GSE99944_Digo_expression_results_significatif.xlsx-sheet-padj<=0.05 anti-conservative 0.00 anti-conservative 0.00 GPL11154 Homo sapiens 9606 NA NA
GSE99944 GSE99944_Digo_expression_results_significatif.xlsx-sheet-padj<=0.10 UP anti-conservative 0.01 anti-conservative 0.01 GPL11154 Homo sapiens 9606 NA NA
GSE99944 GSE99944_Digo_expression_results_significatif.xlsx-sheet-padj<=0.10 DOWN anti-conservative 0.01 anti-conservative 0.01 GPL11154 Homo sapiens 9606 NA NA
GSE99944 GSE99944_Digo_expression_results_significatif.xlsx-sheet-padj<=0.10 anti-conservative 0.01 anti-conservative 0.01 GPL11154 Homo sapiens 9606 NA NA
GSE85385 GSE85385_RNA-seq_Mouse_Cell_Lines.xlsx-sheet-H3WT_DMSO_x_K27M_DMSO anti-conservative 0.78 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE85385 GSE85385_RNA-seq_Mouse_Cell_Lines.xlsx-sheet-H3WT_DMSO_x_H3WT_EPZ anti-conservative 0.84 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE85385 GSE85385_RNA-seq_Mouse_Cell_Lines.xlsx-sheet-K27M_DMSO_x_K27M_EPZ anti-conservative 0.85 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE93774 GSE93774_Full_gene_list-Control_vs_KO.csv.gz anti-conservative 0.61 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE48812 GSE48812_6h_PRECvsLNCAP.diff.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48812 GSE48812_6h_PRECvsLNCAP.diff.txt.gz-set-1 anti-conservative 0.01 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48812 GSE48812_6h_PRECvsLNCAP.diff.txt.gz-set-2 anti-conservative 0.01 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE93339 GSE93339_e125_lung_DEG.txt.gz anti-conservative 0.02 NA NA NA GPL21103 Mus musculus 10090 NA NA
GSE56169 GSE56169_normalized_RNASeq_Ctrl_vs_E2a.txt.gz anti-conservative 0.37 NA NA NA GPL15472 Xenopus tropicalis 8364 NA NA
GSE56169 GSE56169_normalized_RNASeq_Ctrl_vs_E2a.txt.gz anti-conservative 0.37 NA NA NA GPL9320 Xenopus tropicalis 8364 NA NA
GSE48812 GSE48812_6h_PRECvsPC3.diff.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48812 GSE48812_6h_PRECvsPC3.diff.txt.gz-set-1 anti-conservative 0.01 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE48812 GSE48812_6h_PRECvsPC3.diff.txt.gz-set-2 anti-conservative 0.01 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE83541 GSE83541_All_Genes_ZnfTG_Muscle_DESeq2_38.txt.gz anti-conservative 0.82 anti-conservative 0.70 GPL17021 Mus musculus 10090 NA NA
GSE63836 GSE63836_C15Dx_versus_Untr.DESeq.txt.gz anti-conservative 0.63 anti-conservative 0.42 GPL17021 Mus musculus 10090 NA NA
GSE98526 GSE98526_A12_vs_UA159T5.txt.gz anti-conservative 0.58 NA NA NA GPL23431 Streptococcus mutans UA159 210007 NA NA
GSE89004 GSE89004_ppGpp0_vs_H78_differential_all.xls.gz anti-conservative 0.44 anti-conservative 0.21 GPL22592 Pseudomonas protegens 380021 NA NA
GSE75962 GSE75962_control_vs_H2O2.DEseq.txt.gz anti-conservative 0.77 anti-conservative 0.69 GPL11154 Homo sapiens 9606 NA NA
GSE78824 GSE78824_Cuffdiff_transcript_differential_expression_testing.tab.gz anti-conservative 0.78 NA NA NA GPL21548 Cryptococcus neoformans var. grubii H99 235443 NA NA
GSE66148 GSE66148_NC_v_CNS.txt.gz-set-0 anti-conservative 0.55 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE66148 GSE66148_NC_v_CNS.txt.gz-set-0 anti-conservative 0.55 NA NA NA GPL17301 Homo sapiens 9606 NA NA
GSE66148 GSE66148_NC_v_CNS.txt.gz-set-1 anti-conservative 0.52 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE66148 GSE66148_NC_v_CNS.txt.gz-set-1 anti-conservative 0.52 NA NA NA GPL17301 Homo sapiens 9606 NA NA
GSE66148 GSE66148_NC_v_CNS.txt.gz-set-2 anti-conservative 0.54 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE66148 GSE66148_NC_v_CNS.txt.gz-set-2 anti-conservative 0.54 NA NA NA GPL17301 Homo sapiens 9606 NA NA
GSE64242 GSE64242_cufdiff_isoform_exp.diff.gz anti-conservative 0.93 NA NA NA GPL16439 Brassica juncea 3707 NA NA
GSE59980 GSE59980_RNA-seq_598-SKD.txt.gz-set-1 anti-conservative 0.39 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE98526 GSE98526_A1_vs_UA159T5.txt.gz anti-conservative 0.80 NA NA NA GPL23431 Streptococcus mutans UA159 210007 NA NA
GSE70141 GSE70141_Ax2_0H_1+2_ChdC_0H_1+2_DESeq.results.genenames.txt.gz anti-conservative 0.61 anti-conservative 0.38 GPL15643 Dictyostelium discoideum 44689 NA NA
GSE70141 GSE70141_Ax2_0H_1_2_Ax2_10H_1_2_DESeq.results.genenames.txt.gz anti-conservative 0.22 anti-conservative 0.06 GPL15643 Dictyostelium discoideum 44689 NA NA
GSE84737 GSE84737_All_genes_unfiltered_DE.txt.gz anti-conservative 0.45 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE80176 GSE80176_HMLER_Ctrl_vs_DAC_Cuffdiff.txt.gz anti-conservative 0.00 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE73893 GSE73893_DEseq-rip_significant_sites.txt.gz anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE98526 GSE98526_UA159T5_vs_UA159T0.txt.gz anti-conservative 0.93 NA NA NA GPL23431 Streptococcus mutans UA159 210007 NA NA
GSE70141 GSE70141_Ax2_10H_1_2_ChdC_12H_1_2_DESeq.results.genenames.txt.gz anti-conservative 0.30 anti-conservative 0.15 GPL15643 Dictyostelium discoideum 44689 NA NA
GSE84737 GSE84737_Genes_filtered_DE.txt.gz anti-conservative 0.47 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE73376 GSE73376_full_list_edgeR_annotated_DGCR8.txt.gz anti-conservative 0.80 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE73376 GSE73376_full_list_edgeR_annotated_DGCR8.txt.gz anti-conservative 0.80 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE75147 GSE75147_regulated.phf5a_kd_402.down.G166.list.txt.gz anti-conservative 0.02 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE99170 GSE99170_NormalizedData.xls.gz-sheet-normalized data anti-conservative 0.00 NA NA NA GPL19756 Saccharomyces cerevisiae 4932 NA NA
GSE74103 GSE74103_Tobacco_FS_v_WT_DESeq_refGene.all.annotated.txt.gz anti-conservative 0.62 anti-conservative 0.53 GPL13760 Nicotiana tabacum 4097 NA NA
GSE71185 GSE71185_CHD8_CRISPR_RNASeq_Cuffdiff_PolyA.txt.gz anti-conservative 0.38 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE73376 GSE73376_full_list_edgeR_annotated_RRP6.txt.gz anti-conservative 0.82 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE73376 GSE73376_full_list_edgeR_annotated_RRP6.txt.gz anti-conservative 0.82 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE93684 GSE93684_S1-1A-vs-R1-1A.compare.txt.gz anti-conservative 0.30 NA NA NA GPL19524 Haloxylon ammodendron 151230 NA NA
GSE74103 GSE74103_Tobacco_G1_v_WT_DESeq_refGene.all.annotated.txt.gz anti-conservative 0.42 anti-conservative 0.27 GPL13760 Nicotiana tabacum 4097 NA NA
GSE71185 GSE71185_CHD8_Knockdown_RNASeq_Cuffdiff_PolyA.txt.gz anti-conservative 0.47 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE90977 GSE90977_RNA-seq_COMPLETE_4Con-4CJD_SETS_DEFINITIVE_log2FC_0.5.xlsx.gz-sheet-120 dpi anti-conservative 0.06 anti-conservative 0.01 GPL13112 Mus musculus 10090 NA NA
GSE90977 GSE90977_RNA-seq_COMPLETE_4Con-4CJD_SETS_DEFINITIVE_log2FC_0.5.xlsx.gz-sheet-180 dpi anti-conservative 0.10 anti-conservative 0.05 GPL13112 Mus musculus 10090 NA NA
GSE74103 GSE74103_Tobacco_GS_v_WT_DESeq_refGene.all.annotated.txt.gz anti-conservative 0.29 anti-conservative 0.23 GPL13760 Nicotiana tabacum 4097 NA NA
GSE71185 GSE71185_NSD3_Knockdown_RNASeq_Cuffdiff_NSR.txt.gz anti-conservative 0.90 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE75147 GSE75147_regulated.phf5a_kd_861.down.0827.list.txt.gz anti-conservative 0.02 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE62200 GSE62200_Table_S4.xls.gz-sheet-Table S5 N2Y6-M VS LYP9-M anti-conservative 0.81 NA NA NA GPL15432 Oryza sativa 4530 NA NA
GSE90977 GSE90977_RNA_seq_COMPLETE_4_4_SETS_DEFINITIVE.xlsx.gz-sheet-120 dpi anti-conservative 0.54 anti-conservative 0.37 GPL13112 Mus musculus 10090 NA NA
GSE90977 GSE90977_RNA_seq_COMPLETE_4_4_SETS_DEFINITIVE.xlsx.gz-sheet-180 dpi anti-conservative 0.82 anti-conservative 0.83 GPL13112 Mus musculus 10090 NA NA
GSE95687 GSE95687_sleuthResults.txt.gz anti-conservative 0.71 NA NA NA GPL21103 Mus musculus 10090 NA NA
GSE71185 GSE71185_NSD3_Knockdown_RNASeq_Cuffdiff_PolyA.txt.gz anti-conservative 0.77 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE75147 GSE75147_regulated.phf5a_kd_861.down.G166.list.txt.gz anti-conservative 0.01 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE77398 GSE77398_mal_all6_cuffdiff_genes.xls.gz anti-conservative 0.76 NA NA NA GPL21078 Plasmodium falciparum 5833 NA NA
GSE67646 GSE67646_DESeq_1.10.1.txt.gz anti-conservative 0.67 anti-conservative 0.25 GPL17275 Drosophila melanogaster 7227 NA NA
GSE90478 GSE90478_Candidates_B_v_A_withNormData.csv.gz anti-conservative 0.00 anti-conservative 0.00 GPL13112 Mus musculus 10090 NA NA
GSE75147 GSE75147_regulated.phf5a_kd_861.up.G166.list.txt.gz anti-conservative 0.04 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE54846 GSE54846_130529.DESeq.120813.combined-htseq-Luc123-m1_123.HGNC.protein_coding.rsgt20.txt.gz anti-conservative 0.79 anti-conservative 0.45 GPL16791 Homo sapiens 9606 NA NA
GSE90478 GSE90478_Candidates_D_v_B_withNormData_CL.csv.gz anti-conservative 0.00 anti-conservative 0.00 GPL13112 Mus musculus 10090 NA NA
GSE80354 GSE80354_Gata6_DEseq2_res.csv.gz anti-conservative 0.78 anti-conservative 0.87 GPL13112 Mus musculus 10090 NA NA
GSE80354 GSE80354_Gata6_DEseq2_res.csv.gz anti-conservative 0.78 anti-conservative 0.87 GPL19057 Mus musculus 10090 NA NA
GSE94534 GSE94534_MSTR_gene-P005_FC1.2_FPKM2.txt.gz anti-conservative 0.02 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE79916 GSE79916_Dataset_S1-JUM_output_for_differential_AS_analyses_of_PSIdeltaAB_and_full-length_PSI_male_fly_heads.xls.gz anti-conservative 0.13 NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE78240 GSE78240_DESeq_Output.txt.gz anti-conservative 0.66 anti-conservative 0.59 GPL11002 Mus musculus 10090 NA NA
GSE73887 GSE73887_C6661_EBNA1_vs_C6661_IgG.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_C6661_EBNA1_vs_C6661_IgG.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE73887 GSE73887_C6661_EBNA1_vs_C6661_IgG.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_C6661_EBNA1_vs_C6661_IgG.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE80135 GSE80135_Lipo_siProx_SC_results.csv.gz anti-conservative 0.95 anti-conservative 0.82 GPL17303 Homo sapiens 9606 NA NA
GSE73887 GSE73887_C6661_EBNA1_vs_LCL_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_C6661_EBNA1_vs_LCL_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE73887 GSE73887_C6661_EBNA1_vs_LCL_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_C6661_EBNA1_vs_LCL_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE44402 GSE44402_QW_Table_S2-AS_targets_of_PQBP1_identified_from_RNA-seq.xlsx.gz anti-conservative 0.23 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE79916 GSE79916_Dataset_S4-DESeq2_output_for_differential_overall_gene_expression_level_analysis_of_PSIdeltaAB_and_full-length_PSI_male_fly_heads.xls.gz anti-conservative 0.00 NA NA NA GPL17275 Drosophila melanogaster 7227 NA NA
GSE73887 GSE73887_C6661_EBNA1_vs_MUTU_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_C6661_EBNA1_vs_MUTU_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE73887 GSE73887_C6661_EBNA1_vs_MUTU_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_C6661_EBNA1_vs_MUTU_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE72390 GSE72390_DiffExpr_Location_7-12_vs_1-6_Oncorhynchus_keta_de_novo.xlsx anti-conservative 0.90 anti-conservative 0.79 GPL20852 Oncorhynchus keta 8018 NA NA
GSE85329 GSE85329_IGF_project_IGF_results.txt.gz anti-conservative 0.69 anti-conservative 0.55 GPL17021 Mus musculus 10090 NA NA
GSE73887 GSE73887_C6661_EBNA1_vs_RAJI_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_C6661_EBNA1_vs_RAJI_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE73887 GSE73887_C6661_EBNA1_vs_RAJI_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_C6661_EBNA1_vs_RAJI_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE75832 GSE75832_DifferentialExpression_groupwise_comparisons.xlsx-sheet-P14_P2_gene_exp_down anti-conservative 0.76 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE73887 GSE73887_C6661_EBNA1_vs_combine_IgG.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_C6661_EBNA1_vs_combine_IgG.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE73887 GSE73887_C6661_EBNA1_vs_combine_IgG.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_C6661_EBNA1_vs_combine_IgG.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE56253 GSE56253_GeneSpring_NGS_processed_data.txt.gz anti-conservative 0.00 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE52402 GSE52402_B19P16_B20P3_RPKM.txt.gz anti-conservative 0.63 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE85321 GSE85321_Supplemental_Table_4_YAR_vs_YAD_RNA_seq_.xls.gz-sheet-EV_YAD_YAR_isoformexp anti-conservative 0.46 NA NA NA GPL17342 Saccharomyces cerevisiae 4932 NA NA
GSE80135 GSE80135_siNeg_siProx_sig_results.csv.gz anti-conservative 0.79 anti-conservative 0.50 GPL17303 Homo sapiens 9606 NA NA
GSE73887 GSE73887_C6661_EBNA1_vs_combine_IgG_3.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_C6661_EBNA1_vs_combine_IgG_3.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE73887 GSE73887_C6661_EBNA1_vs_combine_IgG_3.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_C6661_EBNA1_vs_combine_IgG_3.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE77427 GSE77427_table_S1.xls.gz anti-conservative 0.00 NA NA NA GPL17788 Brassica rapa subsp. pekinensis 51351 NA NA
GSE74993 GSE74993_SupplementalTables.xlsx-sheet-Table S1 anti-conservative 0.50 anti-conservative 0.33 GPL13112 Mus musculus 10090 NA NA
GSE74993 GSE74993_SupplementalTables.xlsx-sheet-Table S3 anti-conservative 0.68 anti-conservative 0.46 GPL13112 Mus musculus 10090 NA NA
GSE71902 GSE71902_WILD-vs-CPH2.txt.gz anti-conservative 0.83 NA NA NA GPL19036 Candida albicans 5476 NA NA
GSE61954 GSE61954_all_genes_expression_values_supp_table.txt.gz anti-conservative 0.77 anti-conservative 0.59 GPL15463 Zea mays 4577 NA NA
GSE61954 GSE61954_all_genes_expression_values_supp_table.txt.gz anti-conservative 0.77 anti-conservative 0.59 GPL19255 Zea mays 4577 NA NA
GSE97421 GSE97421_GFP_RFP.txt.gz anti-conservative 0.57 anti-conservative 0.31 GPL20828 Danio rerio 7955 NA NA
GSE73887 GSE73887_LCL_EBNA1_vs_C6661_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_LCL_EBNA1_vs_C6661_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE73887 GSE73887_LCL_EBNA1_vs_C6661_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_LCL_EBNA1_vs_C6661_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE62785 GSE62785_Table_S1_Genes_differentially_expressed_in_hns_mutant_in_mid-exponential_phase.xls.gz-sheet-status = OK anti-conservative 0.86 NA NA NA GPL19265 Vibrio cholerae 666 NA NA
GSE97421 GSE97421_GFP_Whole.txt.gz anti-conservative 0.34 anti-conservative 0.04 GPL20828 Danio rerio 7955 NA NA
GSE81128 GSE81128_DESeq2_Results.txt.gz anti-conservative 0.32 anti-conservative 0.14 GPL21813 Tetranychus urticae 32264 NA NA
GSE71710 GSE71710_siDGCR8_v_siSCR_DESeq_gencode.all.symbol.txt.gz anti-conservative 0.84 anti-conservative 0.79 GPL11154 Homo sapiens 9606 NA NA
GSE75731 GSE75731_ckvsd119a_gene_exp_diff.txt.gz anti-conservative 0.49 NA NA NA GPL20326 Staphylococcus aureus subsp. aureus str. Newman 426430 NA NA
GSE73887 GSE73887_LCL_EBNA1_vs_LCL_IgG.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_LCL_EBNA1_vs_LCL_IgG.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE73887 GSE73887_LCL_EBNA1_vs_LCL_IgG.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_LCL_EBNA1_vs_LCL_IgG.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE65072 GSE65072_DESeq_plusDOX_minusDOX.xlsx anti-conservative 0.55 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE62785 GSE62785_Table_S2_Genes_differentially_expressed_in_hns_mutant_in_early_stationary_phase.xls.gz-sheet-status = ok anti-conservative 0.78 NA NA NA GPL19265 Vibrio cholerae 666 NA NA
GSE75731 GSE75731_ckvsdrug_gene_exp_diff.txt.gz anti-conservative 0.64 NA NA NA GPL20326 Staphylococcus aureus subsp. aureus str. Newman 426430 NA NA
GSE73887 GSE73887_LCL_EBNA1_vs_MUTU_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_LCL_EBNA1_vs_MUTU_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE73887 GSE73887_LCL_EBNA1_vs_MUTU_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_LCL_EBNA1_vs_MUTU_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE71916 GSE71916_Expression_Cufflinks_siRbfox1_3+EGFP_compared_to_siNT+EGFP.txt.gz anti-conservative 0.96 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE65935 GSE65935_DKOrvsDKOnr_diffexp.txt.gz anti-conservative 0.53 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE33141 GSE33141_BWADETsKOvsWT2.xls.gz-sheet-DETs-FC1.5-pval0.05 anti-conservative 0.01 NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE96626 GSE96626_DE_TrtVsVeh.xlsx anti-conservative 0.89 anti-conservative 0.87 GPL11002 Mus musculus 10090 NA NA
GSE85360 GSE85360_P140_Setd1b_DEGS_021015.txt.gz anti-conservative 0.00 anti-conservative 0.00 GPL13112 Mus musculus 10090 NA NA
GSE89773 GSE89773_combined_expression_table.txt.gz-set-0 anti-conservative 0.41 anti-conservative 0.21 GPL22662 Mycolicibacterium smegmatis 1772 NA NA
GSE89773 GSE89773_combined_expression_table.txt.gz-set-1 anti-conservative 0.50 anti-conservative 0.26 GPL22662 Mycolicibacterium smegmatis 1772 NA NA
GSE75731 GSE75731_ckvsv149a_gene_exp_diff.txt.gz anti-conservative 0.73 NA NA NA GPL20326 Staphylococcus aureus subsp. aureus str. Newman 426430 NA NA
GSE66506 GSE66506_DE_analysis_010714.xlsx-sheet-SigGenes anti-conservative 0.00 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE65935 GSE65935_WTvsDKOnr_diffexp.txt.gz anti-conservative 0.49 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE59814 GSE59814_processed_data.txt.gz anti-conservative 0.53 NA NA NA GPL17342 Saccharomyces cerevisiae 4932 NA NA
GSE73887 GSE73887_LCL_EBNA1_vs_combine_IgG.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_LCL_EBNA1_vs_combine_IgG.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE73887 GSE73887_LCL_EBNA1_vs_combine_IgG.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_LCL_EBNA1_vs_combine_IgG.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE65935 GSE65935_WTvsDKOr_diffexp.txt.gz anti-conservative 0.47 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE33141 GSE33141_TopHatDETsKOvsWT.xls.gz anti-conservative 0.01 NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE77218 GSE77218_A3_A2.xlsx-sheet-diff_list anti-conservative 0.00 NA NA NA GPL18580 Vitis vinifera 29760 NA NA
GSE73887 GSE73887_LCL_EBNA1_vs_combine_IgG_3.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_LCL_EBNA1_vs_combine_IgG_3.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE73887 GSE73887_LCL_EBNA1_vs_combine_IgG_3.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_LCL_EBNA1_vs_combine_IgG_3.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE48166 GSE48166_Cufflinks_FPKM.txt.gz anti-conservative 0.95 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE48166 GSE48166_Cufflinks_FPKM.txt.gz anti-conservative 0.95 NA NA NA GPL9442 Homo sapiens 9606 NA NA
GSE77218 GSE77218_A4_A2.xlsx-sheet-diff_list anti-conservative 0.00 NA NA NA GPL18580 Vitis vinifera 29760 NA NA
GSE73887 GSE73887_MUTU_EBNA1_vs_C6661_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_MUTU_EBNA1_vs_C6661_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE73887 GSE73887_MUTU_EBNA1_vs_C6661_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_MUTU_EBNA1_vs_C6661_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE65973 GSE65973_NLS_deseq2_all_alluniq_vs_mmu9htdp43nls.txt.gz anti-conservative 0.37 anti-conservative 0.31 GPL9250 Mus musculus 10090 NA NA
GSE90889 GSE90889_geo_hiPSC-RPE_Vehicle_vs_NAM.xlsx anti-conservative 0.69 anti-conservative 0.65 GPL18573 Homo sapiens 9606 NA NA
GSE92282 GSE92282_Results.csv.gz anti-conservative 0.00 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE77218 GSE77218_A4_A3.xlsx-sheet-diff_list anti-conservative 0.00 NA NA NA GPL18580 Vitis vinifera 29760 NA NA
GSE73887 GSE73887_MUTU_EBNA1_vs_LCL_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_MUTU_EBNA1_vs_LCL_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE73887 GSE73887_MUTU_EBNA1_vs_LCL_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_MUTU_EBNA1_vs_LCL_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE74920 GSE74920_SupplementalTable1.xlsx.gz anti-conservative 0.50 anti-conservative 0.33 GPL13112 Mus musculus 10090 NA NA
GSE65487 GSE65487_deseq.rminus_rplus.ensembl.csv.gz anti-conservative 0.67 anti-conservative 0.32 GPL13112 Mus musculus 10090 NA NA
GSE97174 GSE97174_DEseq_DifferentialGeneExpression.txt.gz anti-conservative 0.00 NA NA NA GPL13222 Arabidopsis thaliana 3702 NA NA
GSE71539 GSE71539_TP0vsTP23_gene_results.txt.gz anti-conservative 0.86 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_MUTU_EBNA1_vs_MUTU_IgG.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_MUTU_EBNA1_vs_MUTU_IgG.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE73887 GSE73887_MUTU_EBNA1_vs_MUTU_IgG.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_MUTU_EBNA1_vs_MUTU_IgG.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE74920 GSE74920_SupplementalTable3.xlsx.gz anti-conservative 0.68 anti-conservative 0.46 GPL13112 Mus musculus 10090 NA NA
GSE71539 GSE71539_TP0vsTP23_tag_results.txt.gz anti-conservative 0.85 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE65487 GSE65487_deseq.rplus_gplus.ensembl.csv.gz anti-conservative 0.50 anti-conservative 0.19 GPL13112 Mus musculus 10090 NA NA
GSE54440 GSE54440_WT_Z2_RNAseq_rep2.txt.gz anti-conservative 0.51 NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE79039 GSE79039_Feske_Tcon_DKO_vs_WT_norm_counts_DE_expression_all.txt.gz anti-conservative 0.62 anti-conservative 0.41 GPL17021 Mus musculus 10090 NA NA
GSE75993 GSE75993_processed_data.xls.gz-sheet-1_WT_vs_KO_DESeq_All anti-conservative 0.94 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE73887 GSE73887_MUTU_EBNA1_vs_combine_IgG.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_MUTU_EBNA1_vs_combine_IgG.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE73887 GSE73887_MUTU_EBNA1_vs_combine_IgG.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_MUTU_EBNA1_vs_combine_IgG.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE41766 GSE41766_IBH1-Ox_vs_Col.txt.gz anti-conservative 0.00 anti-conservative 0.00 GPL13222 Arabidopsis thaliana 3702 NA NA
GSE79039 GSE79039_Feske_Tfh_DKO_vs_WT_norm_counts_DE_expression_all.txt.gz anti-conservative 0.73 anti-conservative 0.52 GPL17021 Mus musculus 10090 NA NA
GSE73887 GSE73887_MUTU_EBNA1_vs_combine_IgG_3.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_MUTU_EBNA1_vs_combine_IgG_3.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE73887 GSE73887_MUTU_EBNA1_vs_combine_IgG_3.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_MUTU_EBNA1_vs_combine_IgG_3.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE41766 GSE41766_PRE1-Ox_IBH1-Ox_vs_IBH1-Ox.txt.gz anti-conservative 0.62 anti-conservative 0.29 GPL13222 Arabidopsis thaliana 3702 NA NA
GSE63224 GSE63224_All_unigene_expression.txt.gz-set-5 anti-conservative 0.94 NA NA NA GPL15080 Fragaria x ananassa 3747 NA NA
GSE73887 GSE73887_RAJI_EBNA1_vs_C6661_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_RAJI_EBNA1_vs_C6661_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE73887 GSE73887_RAJI_EBNA1_vs_C6661_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_RAJI_EBNA1_vs_C6661_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE67334 GSE67334_TFH.Vs.TH1.DESeq_Analysis_DE_Genes.txt.gz anti-conservative 0.79 anti-conservative 0.56 GPL16790 Mus musculus 10090 NA NA
GSE63224 GSE63224_Degradome_result.xlsx anti-conservative 0.00 NA NA NA GPL15080 Fragaria x ananassa 3747 NA NA
GSE73887 GSE73887_RAJI_EBNA1_vs_LCL_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_RAJI_EBNA1_vs_LCL_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE73887 GSE73887_RAJI_EBNA1_vs_LCL_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_RAJI_EBNA1_vs_LCL_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE71862 GSE71862_DeSeq2_MCF7_vs_MCF10A_foldchange.txt.gz anti-conservative 0.46 anti-conservative 0.45 GPL18460 Homo sapiens 9606 NA NA
GSE80349 GSE80349_results.txt.gz-set-0 anti-conservative 0.07 NA NA NA GPL21742 Schizosaccharomyces pombe 4896 NA NA
GSE73887 GSE73887_RAJI_EBNA1_vs_MUTU_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_RAJI_EBNA1_vs_MUTU_EBNA1.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE73887 GSE73887_RAJI_EBNA1_vs_MUTU_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_RAJI_EBNA1_vs_MUTU_EBNA1.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE48671 GSE48671_all.GeneDiffExp.txt.gz-set-0 anti-conservative 0.27 NA NA NA GPL17424 Dorcoceras hygrometricum 472368 NA NA
GSE48671 GSE48671_all.GeneDiffExp.txt.gz-set-1 anti-conservative 0.16 NA NA NA GPL17424 Dorcoceras hygrometricum 472368 NA NA
GSE92506 GSE92506_DEseq2_wholeTable.txt.gz anti-conservative 0.64 anti-conservative 0.42 GPL15433 Homo sapiens 9606 NA NA
GSE47773 GSE47773_Matrix_table.txt.gz anti-conservative 0.00 NA NA NA GPL17267 Shewanella piezotolerans WP3 225849 NA NA
GSE73887 GSE73887_RAJI_EBNA1_vs_RAJI_IgG.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_RAJI_EBNA1_vs_RAJI_IgG.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE73887 GSE73887_RAJI_EBNA1_vs_RAJI_IgG.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_RAJI_EBNA1_vs_RAJI_IgG.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE36781 GSE36781_gene_exp_diff.txt.gz anti-conservative 0.96 NA NA NA GPL15377 Alternaria brassicicola 29001 NA NA
GSE40478 GSE40478_output_score.txt.gz anti-conservative 0.32 NA NA NA GPL14602 Mus musculus 10090 NA NA
GSE63510 GSE63510_ko_vs_wt_fold_changes_p_values.txt.gz anti-conservative 0.54 anti-conservative 0.29 GPL13112 Mus musculus 10090 NA NA
GSE71093 GSE71093_a456_vs_a123_sig.txt.gz anti-conservative 0.02 NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE73887 GSE73887_RAJI_EBNA1_vs_combine_IgG.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_RAJI_EBNA1_vs_combine_IgG.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE73887 GSE73887_RAJI_EBNA1_vs_combine_IgG.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_RAJI_EBNA1_vs_combine_IgG.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE61491 GSE61491_CHDKD_differential_expression.txt.gz anti-conservative 0.95 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE57580 GSE57580_different_expressed_gene_list_between_gynoecious_vs_monoecious.txt.gz anti-conservative 0.00 NA NA NA GPL18680 Cucumis melo 3656 NA NA
GSE87167 GSE87167_all_genes.txt.gz anti-conservative 0.38 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE61290 GSE61290_Scr_Vs_shMyb.txt.gz anti-conservative 0.04 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE64359 GSE64359_DE_dfwt_combined.txt.gz anti-conservative 0.00 NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE73887 GSE73887_RAJI_EBNA1_vs_combine_IgG_3.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_RAJI_EBNA1_vs_combine_IgG_3.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE73887 GSE73887_RAJI_EBNA1_vs_combine_IgG_3.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE73887 GSE73887_RAJI_EBNA1_vs_combine_IgG_3.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL9115 Homo sapiens 9606 NA NA
GSE37682 GSE37682_RAW.txt.gz anti-conservative 0.69 NA NA NA GPL15149 Candida albicans 5476 NA NA
GSE81059 GSE81059_cns-control_vs_head-control.csv.gz anti-conservative 0.51 anti-conservative 0.13 GPL15553 Schmidtea mediterranea 79327 NA NA
GSE66793 GSE66793_cmp1-3-geo-gene.tsv.gz anti-conservative 0.86 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE69001 GSE69001_DE_list_planktonic_v_biolfim.txt.gz anti-conservative 0.44 NA NA NA GPL20211 Clostridioides difficile R20291 645463 NA NA
GSE72293 GSE72293_E17_vs_P9_filtered_rpkm5.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE72293 GSE72293_E17_vs_P9_filtered_rpkm5.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE58495 GSE58495_diffexp_LSK.txt.gz-set-0 anti-conservative 0.66 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE58495 GSE58495_diffexp_LSK.txt.gz-set-1 anti-conservative 0.58 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE69001 GSE69001_DE_list_planktonic_v_plate.txt.gz anti-conservative 0.33 NA NA NA GPL20211 Clostridioides difficile R20291 645463 NA NA
GSE63948 GSE63948_Supplemental_Table2_DeepSeq_Fanourgakis_etAl.xls.gz-sheet-short 3’UTR transcripts(<350nt) anti-conservative 0.90 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE63948 GSE63948_Supplemental_Table2_DeepSeq_Fanourgakis_etAl.xls.gz-sheet-medium 3’UTR transcripts anti-conservative 0.95 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE63948 GSE63948_Supplemental_Table2_DeepSeq_Fanourgakis_etAl.xls.gz-sheet-long 3’UTR transcripts(>1500nt) anti-conservative 0.87 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE67756 GSE67756_LA2A-vs-LC2A.compare.txt.gz anti-conservative 0.42 NA NA NA GPL18685 Larimichthys crocea 215358 NA NA
GSE81913 GSE81913_iRed_over_disGran_foldchange.xlsx.gz-sheet-4-5-2016_gran_v_iRed.csv anti-conservative 0.61 anti-conservative 0.43 GPL18413 Danio rerio 7955 NA NA
GSE81913 GSE81913_iRed_over_disGran_foldchange.xlsx.gz-sheet-Up anti-conservative 0.46 NA NA NA GPL18413 Danio rerio 7955 NA NA
GSE81913 GSE81913_iRed_over_disGran_foldchange.xlsx.gz-sheet-Down anti-conservative 0.58 anti-conservative 0.48 GPL18413 Danio rerio 7955 NA NA
GSE69001 GSE69001_DE_list_plate_v_biofilm.txt.gz anti-conservative 0.38 NA NA NA GPL20211 Clostridioides difficile R20291 645463 NA NA
GSE67756 GSE67756_LA2A-vs-LC2A.diff_annot.txt.gz anti-conservative 0.00 NA NA NA GPL18685 Larimichthys crocea 215358 NA NA
GSE41873 GSE41873_FPKM_all_genes_from_CuffDiff.txt.gz anti-conservative 0.74 NA NA NA GPL16222 Plasmodium yoelii yoelii 17XNL 352914 NA NA
GSE86211 GSE86211_CmrA_transcriptome_Expression_of_all_genes.xlsx-sheet-PA14vsPJ01 anti-conservative 0.93 NA NA NA GPL21297 Pseudomonas aeruginosa 287 NA NA
GSE86211 GSE86211_CmrA_transcriptome_Expression_of_all_genes.xlsx-sheet-PJ01vsPJ01dT anti-conservative 0.96 NA NA NA GPL21297 Pseudomonas aeruginosa 287 NA NA
GSE77025 GSE77025_gene_exp.diff.gz anti-conservative 0.35 NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE53040 GSE53040_wtDMSOvswtXP13.txt.gz anti-conservative 0.69 NA NA NA GPL16164 Neurospora crassa 5141 NA NA
GSE68846 GSE68846_KO_vs_Control_05.csv.gz anti-conservative 0.00 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE67756 GSE67756_LB2A-vs-LA2A.compare.txt.gz anti-conservative 0.44 NA NA NA GPL18685 Larimichthys crocea 215358 NA NA
GSE32038 GSE32038_cds.diff.gz anti-conservative 0.07 NA NA NA GPL11203 Drosophila melanogaster 7227 NA NA
GSE66158 GSE66158_nc_vs_59_differentially_expressed_genes_FPKM_GEO.txt.gz anti-conservative 0.00 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE68846 GSE68846_KO_vs_Control_10.csv.gz anti-conservative 0.00 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE67756 GSE67756_LB2A-vs-LA2A.diff_annot.txt.gz anti-conservative 0.00 NA NA NA GPL18685 Larimichthys crocea 215358 NA NA
GSE81043 GSE81043_sh109_final_unique_DESeq_InfFixed_DiffExp.xlsx.gz anti-conservative 0.48 anti-conservative 0.14 GPL16791 Homo sapiens 9606 NA NA
GSE68846 GSE68846_KO_vs_Control_15.csv.gz anti-conservative 0.01 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE67756 GSE67756_LB2A-vs-LC2A.compare.txt.gz anti-conservative 0.53 NA NA NA GPL18685 Larimichthys crocea 215358 NA NA
GSE41367 GSE41367_brenneri_gns.expr.txt.gz anti-conservative 0.36 NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_brenneri_gns.expr.txt.gz anti-conservative 0.36 NA NA NA GPL13776 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_brenneri_gns.expr.txt.gz anti-conservative 0.36 NA NA NA GPL16135 Caenorhabditis briggsae 6238 NA NA
GSE41367 GSE41367_brenneri_gns.expr.txt.gz anti-conservative 0.36 NA NA NA GPL16136 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_brenneri_gns.expr.txt.gz anti-conservative 0.36 NA NA NA GPL16137 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_brenneri_gns.expr.txt.gz anti-conservative 0.36 NA NA NA GPL16138 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_brenneri_gns.expr.txt.gz anti-conservative 0.36 NA NA NA GPL16139 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_brenneri_gns.expr.txt.gz anti-conservative 0.36 NA NA NA GPL16140 Caenorhabditis remanei 31234 NA NA
GSE41367 GSE41367_brenneri_gns.expr.txt.gz anti-conservative 0.36 NA NA NA GPL16141 Caenorhabditis remanei 31234 NA NA
GSE97060 GSE97060_122KOMouse_SleuthOutput.txt.gz anti-conservative 0.46 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE68846 GSE68846_KO_vs_Control_20.csv.gz anti-conservative 0.01 anti-conservative 0.01 GPL13112 Mus musculus 10090 NA NA
GSE67756 GSE67756_LB2A-vs-LC2A.diff_annot.txt.gz anti-conservative 0.00 NA NA NA GPL18685 Larimichthys crocea 215358 NA NA
GSE41367 GSE41367_brenneri_soap.expr.txt.gz anti-conservative 0.37 NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_brenneri_soap.expr.txt.gz anti-conservative 0.37 NA NA NA GPL13776 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_brenneri_soap.expr.txt.gz anti-conservative 0.37 NA NA NA GPL16135 Caenorhabditis briggsae 6238 NA NA
GSE41367 GSE41367_brenneri_soap.expr.txt.gz anti-conservative 0.37 NA NA NA GPL16136 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_brenneri_soap.expr.txt.gz anti-conservative 0.37 NA NA NA GPL16137 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_brenneri_soap.expr.txt.gz anti-conservative 0.37 NA NA NA GPL16138 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_brenneri_soap.expr.txt.gz anti-conservative 0.37 NA NA NA GPL16139 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_brenneri_soap.expr.txt.gz anti-conservative 0.37 NA NA NA GPL16140 Caenorhabditis remanei 31234 NA NA
GSE41367 GSE41367_brenneri_soap.expr.txt.gz anti-conservative 0.37 NA NA NA GPL16141 Caenorhabditis remanei 31234 NA NA
GSE37001 GSE37001_DEgenes.txt.gz anti-conservative 0.00 anti-conservative 0.00 GPL10999 Homo sapiens 9606 NA NA
GSE64513 GSE64513_FOXD3_vs_Control_gene_exp_diff_anno.txt.gz anti-conservative 0.61 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE67756 GSE67756_LB2A-vs-LF1A.compare.txt.gz anti-conservative 0.49 NA NA NA GPL18685 Larimichthys crocea 215358 NA NA
GSE41367 GSE41367_briggsae_gns.expr.txt.gz anti-conservative 0.33 NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_briggsae_gns.expr.txt.gz anti-conservative 0.33 NA NA NA GPL13776 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_briggsae_gns.expr.txt.gz anti-conservative 0.33 NA NA NA GPL16135 Caenorhabditis briggsae 6238 NA NA
GSE41367 GSE41367_briggsae_gns.expr.txt.gz anti-conservative 0.33 NA NA NA GPL16136 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_briggsae_gns.expr.txt.gz anti-conservative 0.33 NA NA NA GPL16137 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_briggsae_gns.expr.txt.gz anti-conservative 0.33 NA NA NA GPL16138 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_briggsae_gns.expr.txt.gz anti-conservative 0.33 NA NA NA GPL16139 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_briggsae_gns.expr.txt.gz anti-conservative 0.33 NA NA NA GPL16140 Caenorhabditis remanei 31234 NA NA
GSE41367 GSE41367_briggsae_gns.expr.txt.gz anti-conservative 0.33 NA NA NA GPL16141 Caenorhabditis remanei 31234 NA NA
GSE38764 GSE38764_DESeq.nbVsneuron-orig-FDR0.01.txt.gz anti-conservative 0.00 anti-conservative 0.00 GPL13304 Drosophila melanogaster 7227 NA NA
GSE38764 GSE38764_DESeq.nbVsneuron-orig-FDR0.01.txt.gz anti-conservative 0.00 anti-conservative 0.00 GPL9061 Drosophila melanogaster 7227 NA NA
GSE37001 GSE37001_DEintrons.txt.gz anti-conservative 0.00 anti-conservative 0.00 GPL10999 Homo sapiens 9606 NA NA
GSE95108 GSE95108_DEtest_wo_wt1.xlsx-sheet-DEtest anti-conservative 0.76 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE64513 GSE64513_FOXD3_vs_Control_gene_exp_diff_sig_anno.txt.gz anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE67756 GSE67756_LB2A-vs-LF1A.diff_annot.txt.gz anti-conservative 0.00 NA NA NA GPL18685 Larimichthys crocea 215358 NA NA
GSE41367 GSE41367_briggsae_soap.expr.txt.gz anti-conservative 0.35 NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_briggsae_soap.expr.txt.gz anti-conservative 0.35 NA NA NA GPL13776 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_briggsae_soap.expr.txt.gz anti-conservative 0.35 NA NA NA GPL16135 Caenorhabditis briggsae 6238 NA NA
GSE41367 GSE41367_briggsae_soap.expr.txt.gz anti-conservative 0.35 NA NA NA GPL16136 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_briggsae_soap.expr.txt.gz anti-conservative 0.35 NA NA NA GPL16137 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_briggsae_soap.expr.txt.gz anti-conservative 0.35 NA NA NA GPL16138 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_briggsae_soap.expr.txt.gz anti-conservative 0.35 NA NA NA GPL16139 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_briggsae_soap.expr.txt.gz anti-conservative 0.35 NA NA NA GPL16140 Caenorhabditis remanei 31234 NA NA
GSE41367 GSE41367_briggsae_soap.expr.txt.gz anti-conservative 0.35 NA NA NA GPL16141 Caenorhabditis remanei 31234 NA NA
GSE37001 GSE37001_DEisoforms.txt.gz anti-conservative 0.00 NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE41367 GSE41367_elegans_gns.expr.txt.gz anti-conservative 0.30 NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_elegans_gns.expr.txt.gz anti-conservative 0.30 NA NA NA GPL13776 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_elegans_gns.expr.txt.gz anti-conservative 0.30 NA NA NA GPL16135 Caenorhabditis briggsae 6238 NA NA
GSE41367 GSE41367_elegans_gns.expr.txt.gz anti-conservative 0.30 NA NA NA GPL16136 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_elegans_gns.expr.txt.gz anti-conservative 0.30 NA NA NA GPL16137 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_elegans_gns.expr.txt.gz anti-conservative 0.30 NA NA NA GPL16138 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_elegans_gns.expr.txt.gz anti-conservative 0.30 NA NA NA GPL16139 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_elegans_gns.expr.txt.gz anti-conservative 0.30 NA NA NA GPL16140 Caenorhabditis remanei 31234 NA NA
GSE41367 GSE41367_elegans_gns.expr.txt.gz anti-conservative 0.30 NA NA NA GPL16141 Caenorhabditis remanei 31234 NA NA
GSE79286 GSE79286_CYC2vsWT_Conj-2.5hr_RNA-Seq.xlsx-sheet-Significant-FULL anti-conservative 0.00 NA NA NA GPL21412 Tetrahymena thermophila 5911 NA NA
GSE41367 GSE41367_elegans_soap.expr.txt.gz anti-conservative 0.26 NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_elegans_soap.expr.txt.gz anti-conservative 0.26 NA NA NA GPL13776 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_elegans_soap.expr.txt.gz anti-conservative 0.26 NA NA NA GPL16135 Caenorhabditis briggsae 6238 NA NA
GSE41367 GSE41367_elegans_soap.expr.txt.gz anti-conservative 0.26 NA NA NA GPL16136 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_elegans_soap.expr.txt.gz anti-conservative 0.26 NA NA NA GPL16137 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_elegans_soap.expr.txt.gz anti-conservative 0.26 NA NA NA GPL16138 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_elegans_soap.expr.txt.gz anti-conservative 0.26 NA NA NA GPL16139 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_elegans_soap.expr.txt.gz anti-conservative 0.26 NA NA NA GPL16140 Caenorhabditis remanei 31234 NA NA
GSE41367 GSE41367_elegans_soap.expr.txt.gz anti-conservative 0.26 NA NA NA GPL16141 Caenorhabditis remanei 31234 NA NA
GSE32038 GSE32038_promoters.diff.gz anti-conservative 0.05 NA NA NA GPL11203 Drosophila melanogaster 7227 NA NA
GSE77568 GSE77568_CHIP_DMSO_vs_JQ1.txt.gz anti-conservative 0.00 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE77568 GSE77568_CHIP_DMSO_vs_JQ1.txt.gz anti-conservative 0.00 NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE83375 GSE83375_GB_glia.FPKM.txt.gz anti-conservative 0.66 NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE79286 GSE79286_CYC2vsWT_Conj-2hr_RNA-Seq.xlsx-sheet-Significant-FULL anti-conservative 0.00 NA NA NA GPL21412 Tetrahymena thermophila 5911 NA NA
GSE79286 GSE79286_CYC2vsWT_Conj-2hr_RNA-Seq.xlsx-sheet-Significant-UP anti-conservative 0.00 NA NA NA GPL21412 Tetrahymena thermophila 5911 NA NA
GSE64413 GSE64413_orf57_pval_cutoff_0.001.csv.gz anti-conservative 0.00 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE41367 GSE41367_japonica_gns.expr.txt.gz anti-conservative 0.29 NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_japonica_gns.expr.txt.gz anti-conservative 0.29 NA NA NA GPL13776 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_japonica_gns.expr.txt.gz anti-conservative 0.29 NA NA NA GPL16135 Caenorhabditis briggsae 6238 NA NA
GSE41367 GSE41367_japonica_gns.expr.txt.gz anti-conservative 0.29 NA NA NA GPL16136 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_japonica_gns.expr.txt.gz anti-conservative 0.29 NA NA NA GPL16137 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_japonica_gns.expr.txt.gz anti-conservative 0.29 NA NA NA GPL16138 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_japonica_gns.expr.txt.gz anti-conservative 0.29 NA NA NA GPL16139 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_japonica_gns.expr.txt.gz anti-conservative 0.29 NA NA NA GPL16140 Caenorhabditis remanei 31234 NA NA
GSE41367 GSE41367_japonica_gns.expr.txt.gz anti-conservative 0.29 NA NA NA GPL16141 Caenorhabditis remanei 31234 NA NA
GSE32038 GSE32038_splicing.diff.gz anti-conservative 0.06 NA NA NA GPL11203 Drosophila melanogaster 7227 NA NA
GSE74929 GSE74929_Diff_Exp.txt.gz-set-0 anti-conservative 0.00 NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE74929 GSE74929_Diff_Exp.txt.gz-set-1 anti-conservative 0.22 NA NA NA GPL14875 Danio rerio 7955 NA NA
GSE77568 GSE77568_CHIP_DMSO_vs_input.txt.gz anti-conservative 0.00 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE77568 GSE77568_CHIP_DMSO_vs_input.txt.gz anti-conservative 0.00 NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE79286 GSE79286_CYC2vsWT_Conj-3.5hr_RNA-Seq.xlsx-sheet-Significant-FULL anti-conservative 0.00 NA NA NA GPL21412 Tetrahymena thermophila 5911 NA NA
GSE64413 GSE64413_orf57_pval_cutoff_0.05.csv.gz anti-conservative 0.04 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE41590 GSE41590_Gene_expression.txt.gz anti-conservative 0.01 anti-conservative 0.01 GPL13272 Saccharomyces cerevisiae 4932 NA NA
GSE41590 GSE41590_Gene_expression.txt.gz anti-conservative 0.01 anti-conservative 0.01 GPL13821 Saccharomyces cerevisiae 4932 NA NA
GSE57217 GSE57217_bck1wt_geneexp_diff.txt.gz anti-conservative 0.73 NA NA NA GPL14571 Cryptococcus neoformans 5207 NA NA
GSE41367 GSE41367_japonica_soap.expr.txt.gz anti-conservative 0.29 NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_japonica_soap.expr.txt.gz anti-conservative 0.29 NA NA NA GPL13776 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_japonica_soap.expr.txt.gz anti-conservative 0.29 NA NA NA GPL16135 Caenorhabditis briggsae 6238 NA NA
GSE41367 GSE41367_japonica_soap.expr.txt.gz anti-conservative 0.29 NA NA NA GPL16136 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_japonica_soap.expr.txt.gz anti-conservative 0.29 NA NA NA GPL16137 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_japonica_soap.expr.txt.gz anti-conservative 0.29 NA NA NA GPL16138 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_japonica_soap.expr.txt.gz anti-conservative 0.29 NA NA NA GPL16139 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_japonica_soap.expr.txt.gz anti-conservative 0.29 NA NA NA GPL16140 Caenorhabditis remanei 31234 NA NA
GSE41367 GSE41367_japonica_soap.expr.txt.gz anti-conservative 0.29 NA NA NA GPL16141 Caenorhabditis remanei 31234 NA NA
GSE79820 GSE79820_all_de_cuffdiff.tsv.gz anti-conservative 0.00 NA NA NA GPL10999 Homo sapiens 9606 NA NA
GSE41367 GSE41367_remanei_gns.expr.txt.gz anti-conservative 0.27 NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_remanei_gns.expr.txt.gz anti-conservative 0.27 NA NA NA GPL13776 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_remanei_gns.expr.txt.gz anti-conservative 0.27 NA NA NA GPL16135 Caenorhabditis briggsae 6238 NA NA
GSE41367 GSE41367_remanei_gns.expr.txt.gz anti-conservative 0.27 NA NA NA GPL16136 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_remanei_gns.expr.txt.gz anti-conservative 0.27 NA NA NA GPL16137 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_remanei_gns.expr.txt.gz anti-conservative 0.27 NA NA NA GPL16138 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_remanei_gns.expr.txt.gz anti-conservative 0.27 NA NA NA GPL16139 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_remanei_gns.expr.txt.gz anti-conservative 0.27 NA NA NA GPL16140 Caenorhabditis remanei 31234 NA NA
GSE41367 GSE41367_remanei_gns.expr.txt.gz anti-conservative 0.27 NA NA NA GPL16141 Caenorhabditis remanei 31234 NA NA
GSE57254 GSE57254_WT_KD_CELF1_Fold_change.txt.gz anti-conservative 0.00 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE57217 GSE57217_mkk2wt_geneexp_diff.txt.gz anti-conservative 0.80 NA NA NA GPL14571 Cryptococcus neoformans 5207 NA NA
GSE41367 GSE41367_remanei_soap.expr.txt.gz anti-conservative 0.25 NA NA NA GPL13657 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_remanei_soap.expr.txt.gz anti-conservative 0.25 NA NA NA GPL13776 Caenorhabditis elegans 6239 NA NA
GSE41367 GSE41367_remanei_soap.expr.txt.gz anti-conservative 0.25 NA NA NA GPL16135 Caenorhabditis briggsae 6238 NA NA
GSE41367 GSE41367_remanei_soap.expr.txt.gz anti-conservative 0.25 NA NA NA GPL16136 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_remanei_soap.expr.txt.gz anti-conservative 0.25 NA NA NA GPL16137 Caenorhabditis japonica 281687 NA NA
GSE41367 GSE41367_remanei_soap.expr.txt.gz anti-conservative 0.25 NA NA NA GPL16138 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_remanei_soap.expr.txt.gz anti-conservative 0.25 NA NA NA GPL16139 Caenorhabditis brenneri 135651 NA NA
GSE41367 GSE41367_remanei_soap.expr.txt.gz anti-conservative 0.25 NA NA NA GPL16140 Caenorhabditis remanei 31234 NA NA
GSE41367 GSE41367_remanei_soap.expr.txt.gz anti-conservative 0.25 NA NA NA GPL16141 Caenorhabditis remanei 31234 NA NA
GSE80264 GSE80264_Group_2_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-0 anti-conservative 0.01 NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE80264 GSE80264_Group_2_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-1 anti-conservative 0.00 NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE80264 GSE80264_Group_2_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-2 anti-conservative 0.02 NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE80264 GSE80264_Group_2_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-3 anti-conservative 0.56 NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE43189 GSE43189_processed_h99_rim101.csv.gz anti-conservative 0.46 NA NA NA GPL16431 Cryptococcus neoformans 5207 NA NA
GSE90615 GSE90615_DifferentialExpression.xlsx-sheet-Vehicle_12dP-MI_vs_Pre-MI anti-conservative 0.48 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE90615 GSE90615_DifferentialExpression.xlsx-sheet-Sfrp2_12dP-MI_vs_Pre-MI anti-conservative 0.43 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE90615 GSE90615_DifferentialExpression.xlsx-sheet-1dP-MI_vs_Pre-MI anti-conservative 0.68 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE80264 GSE80264_Group_3_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-0 anti-conservative 0.01 NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE80264 GSE80264_Group_3_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-1 anti-conservative 0.03 NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE80264 GSE80264_Group_3_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-2 anti-conservative 0.00 NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE80264 GSE80264_Group_3_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-3 anti-conservative 0.54 NA NA NA GPL18573 Homo sapiens 9606 NA NA
GSE57217 GSE57217_mpk1wt_geneexp_diff.txt.gz anti-conservative 0.77 NA NA NA GPL14571 Cryptococcus neoformans 5207 NA NA
GSE44457 GSE44457_Human_transcriptome_deg.txt.gz anti-conservative 0.00 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE94512 GSE94512_NaPi_vs_Lys.txt.gz anti-conservative 0.95 anti-conservative 0.98 GPL17452 Staphylococcus aureus 1280 NA NA
GSE90013 GSE90013_cds_exp.diff_A_B_cds.txt.gz anti-conservative 0.03 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE75510 GSE75510_diffExonExprZH1vsB6.txt.gz anti-conservative 0.94 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE67674 GSE67674_RNA-seq_analysis_PBSDMSOvsPBSGSK-J4.txt.gz anti-conservative 0.95 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE62448 GSE62448_merged_normalized_counts.tab.gz-set-0 anti-conservative 0.00 anti-conservative 0.00 GPL11154 Homo sapiens 9606 NA NA
GSE62448 GSE62448_merged_normalized_counts.tab.gz-set-1 anti-conservative 0.00 anti-conservative 0.00 GPL11154 Homo sapiens 9606 NA NA
GSE90013 GSE90013_gene_exp.diff_A_B_Gene.txt.gz anti-conservative 0.02 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE75510 GSE75510_diffExonExprZH3vsB6.txt.gz anti-conservative 0.91 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE69110 GSE69110_d2GFP_vs_d2Sox9OE.deseq.res.csv.gz anti-conservative 0.58 anti-conservative 0.28 GPL18573 Homo sapiens 9606 NA NA
GSE90712 GSE90712_Thy1_positive_E_Cad_positive_vs_Thy1_positive_E_Cad_negative.DESeq2_Results.tsv.gz anti-conservative 0.60 anti-conservative 0.36 GPL19057 Mus musculus 10090 NA NA
GSE90013 GSE90013_isoform_exp.diff_A_B_Isoform.txt.gz anti-conservative 0.03 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE70876 GSE70876_Additional_file_4.xls.gz anti-conservative 0.32 NA NA NA GPL20688 Dunaliella tertiolecta 3047 NA NA
GSE95337 GSE95337_DESeq_EH_Control.vs.dKO.res.txt.gz anti-conservative 0.56 anti-conservative 0.38 GPL17021 Mus musculus 10090 NA NA
GSE79143 GSE79143_SNPCountsTable.txt.gz anti-conservative 0.49 NA NA NA GPL15670 Ovis aries 9940 NA NA
GSE90013 GSE90013_tss_group_exp.diff_A_B_tss.txt.gz anti-conservative 0.03 NA NA NA GPL16791 Homo sapiens 9606 NA NA
GSE52153 GSE52153_czt-1DMSOvsczt-1STS.txt.gz anti-conservative 0.55 NA NA NA GPL16164 Neurospora crassa 5141 NA NA
GSE40948 GSE40948_NPC_vs_ESC_2replicates_result_10.transcript_summary.tsv.gz anti-conservative 0.48 NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE40948 GSE40948_NPC_vs_ESC_2replicates_result_10.transcript_summary.tsv.gz anti-conservative 0.48 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE82134 GSE82134_NCBI_res_root_deseq_full.xlsx anti-conservative 0.61 NA NA NA GPL21973 Hordeum vulgare 4513 NA NA
GSE78967 GSE78967_Deseq_Analysis.xlsx anti-conservative 0.47 anti-conservative 0.38 GPL21570 Schistosoma mansoni 6183 NA NA
GSE52153 GSE52153_wtDMSOvswtSTS.txt.gz anti-conservative 0.71 NA NA NA GPL16164 Neurospora crassa 5141 NA NA
GSE53265 GSE53265_DESeq.PBNbVsLBNb-orig-FDR0.01.txt.gz anti-conservative 0.00 anti-conservative 0.00 GPL13304 Drosophila melanogaster 7227 NA NA
GSE87448 GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-0 anti-conservative 0.04 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE87448 GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-1 anti-conservative 0.02 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE87448 GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-2 anti-conservative 0.02 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE87448 GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-3 anti-conservative 0.03 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE87448 GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-4 anti-conservative 0.04 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE87448 GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-5 anti-conservative 0.02 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE87448 GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-6 anti-conservative 0.02 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE87448 GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-7 anti-conservative 0.03 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE87448 GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-8 anti-conservative 0.04 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE87448 GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-9 anti-conservative 0.02 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE87448 GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-10 anti-conservative 0.02 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE87448 GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-11 anti-conservative 0.03 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE66822 GSE66822_PRMT5-vs-WT_SC-mrna_counts.txt.gz anti-conservative 0.83 anti-conservative 0.74 GPL18635 Mus musculus 10090 NA NA
GSE53265 GSE53265_DESeq.PBNbVsPBNbMed27IR-orig-FDR0.01.txt.gz anti-conservative 0.00 anti-conservative 0.00 GPL13304 Drosophila melanogaster 7227 NA NA
GSE56439 GSE56439_DiffExprAnalysis_1.5_fold_.xlsx.gz-sheet-ABA vs CK(>1.5 fold) anti-conservative 0.00 NA NA NA GPL18517 Arachis hypogaea 3818 NA NA
GSE56439 GSE56439_DiffExprAnalysis_1.5_fold_.xlsx.gz-sheet-water defici VS ABA (>1.5 fold) anti-conservative 0.00 NA NA NA GPL18517 Arachis hypogaea 3818 NA NA
GSE39812 GSE39812_FB_result_transcript_summary.tsv.txt.gz anti-conservative 0.65 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE87448 GSE87448_AKT_vs_CTRL_at_2fold-p005-4433_genes.txt.gz-set-0 anti-conservative 0.07 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE87448 GSE87448_AKT_vs_CTRL_at_2fold-p005-4433_genes.txt.gz-set-1 anti-conservative 0.03 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE87448 GSE87448_AKT_vs_CTRL_at_2fold-p005-4433_genes.txt.gz-set-2 anti-conservative 0.25 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE87448 GSE87448_AKT_vs_CTRL_at_2fold-p005-4433_genes.txt.gz-set-3 anti-conservative 0.23 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE87448 GSE87448_KRAS_vs_CTRL_at_2fold-p005-4238_genes.txt.gz-set-0 anti-conservative 0.08 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE87448 GSE87448_KRAS_vs_CTRL_at_2fold-p005-4238_genes.txt.gz-set-1 anti-conservative 0.15 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE87448 GSE87448_KRAS_vs_CTRL_at_2fold-p005-4238_genes.txt.gz-set-2 anti-conservative 0.03 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE87448 GSE87448_KRAS_vs_CTRL_at_2fold-p005-4238_genes.txt.gz-set-3 anti-conservative 0.22 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE87448 GSE87448_MYC_vs_CTRL_at_2fold-p005-3502_genes_Myc_Only.txt.gz-set-0 anti-conservative 0.07 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE87448 GSE87448_MYC_vs_CTRL_at_2fold-p005-3502_genes_Myc_Only.txt.gz-set-1 anti-conservative 0.03 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE75878 GSE75878_promoters.diff.gz anti-conservative 0.44 NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE75833 GSE75833_DESeq-processed_FB.control_vs_BR.txt.gz anti-conservative 0.60 anti-conservative 0.14 GPL13304 Drosophila melanogaster 7227 NA NA
GSE60968 GSE60968_VEC_vs_CRE_DE.txt.gz anti-conservative 0.38 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE50535 GSE50535_diffexp_1.txt.gz-set-0 anti-conservative 0.63 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE50535 GSE50535_diffexp_1.txt.gz-set-1 anti-conservative 0.64 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE93827 GSE93827_LMP1_2a_vs_GFP.txt.gz anti-conservative 0.51 anti-conservative 0.27 GPL19057 Mus musculus 10090 NA NA
GSE75878 GSE75878_splicing.diff.gz anti-conservative 0.38 NA NA NA GPL11002 Mus musculus 10090 NA NA
GSE70488 GSE70488_Day_vs_Night_sSeq.txt.gz anti-conservative 0.35 NA NA NA GPL14749 Acropora millepora 45264 NA NA
GSE59715 GSE59715_finalHiCRNAseqTable.csv.gz anti-conservative 0.73 anti-conservative 0.44 GPL13657 Caenorhabditis elegans 6239 NA NA
GSE50535 GSE50535_diffexp_2.txt.gz anti-conservative 0.56 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE83134 GSE83134_RYBPfl.DESeq2.Output.txt.gz-set-0 anti-conservative 0.92 anti-conservative 0.99 GPL19057 Mus musculus 10090 NA NA
GSE50535 GSE50535_diffexp_3.txt.gz-set-0 anti-conservative 0.61 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE50535 GSE50535_diffexp_3.txt.gz-set-1 anti-conservative 0.30 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE80348 GSE80348_20160316_6h_wt_vs_mu.xlsx anti-conservative 0.52 NA NA NA GPL21741 Danio rerio 7955 NA NA
GSE87398 GSE87398_gene_exp.diff.gz anti-conservative 0.83 NA NA NA GPL22492 Acinetobacter baumannii ATCC 17978 400667 NA NA
GSE99096 GSE99096_Yang_Processed_data_Oxidative_Stress.xlsx anti-conservative 0.31 NA NA NA GPL23496 Lactobacillus plantarum 1590 NA NA
GSE70069 GSE70069_Deregulated_genes_upon_knock-down_of_Setdb1_in_C2C12.txt.gz anti-conservative 0.00 anti-conservative 0.00 GPL13112 Mus musculus 10090 NA NA
GSE52080 GSE52080_processed_data_pvalue-filtered.txt.gz anti-conservative 0.00 NA NA NA GPL9185 Mus musculus 10090 NA NA
GSE85627 GSE85627_mDUX-mESC.xlsx.gz-sheet-Unsorted anti-conservative 0.62 anti-conservative 0.16 GPL17021 Mus musculus 10090 NA NA
GSE85627 GSE85627_mDUX-mESC.xlsx.gz-sheet-Sorted anti-conservative 0.53 anti-conservative 0.18 GPL17021 Mus musculus 10090 NA NA
GSE74171 GSE74171_expressed_transcript_aging_RNAseq_posterior_midgut.txt.gz anti-conservative 0.51 NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE93877 GSE93877_NB4_RNASeq_ATRA.txt.gz anti-conservative 0.84 anti-conservative 0.75 GPL18573 Homo sapiens 9606 NA NA
GSE74171 GSE74171_processed_aging_data.txt.gz anti-conservative 0.01 anti-conservative 0.00 GPL13304 Drosophila melanogaster 7227 NA NA
GSE57482 GSE57482_output_score.txt.gz anti-conservative 0.25 NA NA NA GPL14602 Mus musculus 10090 NA NA
GSE89238 GSE89238_SET2_KO_DESeq2_output.txt.gz anti-conservative 0.63 anti-conservative 0.67 GPL19756 Saccharomyces cerevisiae 4932 NA NA
GSE93877 GSE93877_NB4_RNASeq_DMSO.txt.gz anti-conservative 0.95 anti-conservative 0.93 GPL18573 Homo sapiens 9606 NA NA
GSE87398 GSE87398_genes_group_exp.diff.gz anti-conservative 0.83 NA NA NA GPL22492 Acinetobacter baumannii ATCC 17978 400667 NA NA
GSE73323 GSE73323_gene_expression_profiles.txt.gz anti-conservative 0.00 NA NA NA GPL18644 Pseudomonas aeruginosa 287 NA NA
GSE65688 GSE65688_gene_exp.diff_GFP_TAT_Gene.csv.gz anti-conservative 0.02 NA NA NA GPL16288 Homo sapiens 9606 NA NA
GSE59571 GSE59571_S13113_genesdiff.xlsx anti-conservative 0.70 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE96999 GSE96999_DESeq2_miseq_output.txt.gz anti-conservative 0.25 anti-conservative 0.23 GPL15520 Homo sapiens 9606 NA NA
GSE96999 GSE96999_DESeq2_miseq_output.txt.gz anti-conservative 0.25 anti-conservative 0.23 GPL18573 Homo sapiens 9606 NA NA
GSE94280 GSE94280_DESeq2_results_Y_vs_O.txt.gz anti-conservative 0.61 anti-conservative 0.33 GPL16791 Homo sapiens 9606 NA NA
GSE93313 GSE93313_DESeq_2Dvs3D.txt.gz anti-conservative 0.77 anti-conservative 0.42 GPL13112 Mus musculus 10090 NA NA
GSE74168 GSE74168_expressed_transcripts_RNAseq_GLIrnai_posterior_midgut_EC.txt.gz anti-conservative 0.44 NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE68998 GSE68998_DiffExpDeseq2_mdx2_NOut_3.6.14.csv.gz anti-conservative 0.59 anti-conservative 0.47 GPL17021 Mus musculus 10090 NA NA
GSE96999 GSE96999_DESeq2_nextseq_output.txt.gz anti-conservative 0.41 anti-conservative 0.09 GPL15520 Homo sapiens 9606 NA NA
GSE96999 GSE96999_DESeq2_nextseq_output.txt.gz anti-conservative 0.41 anti-conservative 0.09 GPL18573 Homo sapiens 9606 NA NA
GSE93313 GSE93313_DESeq_2DvsTranswell.txt.gz anti-conservative 0.67 anti-conservative 0.34 GPL13112 Mus musculus 10090 NA NA
GSE86235 GSE86235_KORvsKOS.xls.gz anti-conservative 0.00 NA NA NA GPL13112 Mus musculus 10090 NA NA
GSE36959 GSE36959_gene_exp_diff.txt.gz anti-conservative 0.64 NA NA NA GPL15388 Nannochloropsis oceanica 145522 NA NA
GSE93313 GSE93313_DESeq_3DvsTranswell.txt.gz anti-conservative 0.79 anti-conservative 0.55 GPL13112 Mus musculus 10090 NA NA
GSE86054 GSE86054_gene_expression.txt.gz anti-conservative 0.95 anti-conservative 0.89 GPL19132 Drosophila melanogaster 7227 NA NA
GSE84481 GSE84481_3xTg.txt.gz anti-conservative 0.05 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE72491 GSE72491_PCBP2_KO_v_WT_DESeq_gencode.all.name.txt.gz anti-conservative 0.72 anti-conservative 0.68 GPL17021 Mus musculus 10090 NA NA
GSE49587 GSE49587_ORvSmn_DEUtable.txt.gz anti-conservative 0.77 NA NA NA GPL13304 Drosophila melanogaster 7227 NA NA
GSE93547 GSE93547_LMvsWTM_cleaned_deseq2.csv.gz anti-conservative 0.51 anti-conservative 0.32 GPL22913 Vibrio parahaemolyticus RIMD 2210633 223926 NA NA
GSE85847 GSE85847_matrix_rnaseq_GEO_submission_jsantos20160817.txt.gz anti-conservative 0.66 anti-conservative 0.57 GPL13222 Arabidopsis thaliana 3702 NA NA
GSE60191 GSE60191_RNA_halflives.xlsx.gz-sheet-Tabelle1 anti-conservative 0.32 NA NA NA GPL11154 Homo sapiens 9606 NA NA
GSE84481 GSE84481_Neuro2a.txt.gz-set-0 anti-conservative 0.04 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE84481 GSE84481_Neuro2a.txt.gz-set-1 anti-conservative 0.04 NA NA NA GPL17021 Mus musculus 10090 NA NA
GSE51645 GSE51645_ASE_processed_data.txt.gz anti-conservative 0.98 NA NA NA GPL13821 Saccharomyces cerevisiae 4932 NA NA
GSE51645 GSE51645_ASE_processed_data.txt.gz anti-conservative 0.98 NA NA NA GPL9377 Saccharomyces cerevisiae 4932 NA NA
GSE17970 GSE17970_supplemental_table_1.xls.gz anti-conservative 0.47 NA NA NA GPL9100 Chlamydomonas reinhardtii 3055 NA NA
GSE17970 GSE17970_supplemental_table_1.xls.gz anti-conservative 0.47 NA NA NA GPL9152 Chlamydomonas reinhardtii 3055 NA NA
GSE50198 GSE50198_Tet1kd_vs_v6.5_DESeq_results.txt.gz-set-0 anti-conservative 0.57 anti-conservative 0.35 GPL10010 Mus musculus 10090 NA NA
GSE50198 GSE50198_Tet1kd_vs_v6.5_DESeq_results.txt.gz-set-0 anti-conservative 0.57 anti-conservative 0.35 GPL14602 Mus musculus 10090 NA NA
GSE50198 GSE50198_Tet1kd_vs_v6.5_DESeq_results.txt.gz-set-1 anti-conservative 0.46 anti-conservative 0.17 GPL10010 Mus musculus 10090 NA NA
GSE50198 GSE50198_Tet1kd_vs_v6.5_DESeq_results.txt.gz-set-1 anti-conservative 0.46 anti-conservative 0.17 GPL14602 Mus musculus 10090 NA NA
GSE50198 GSE50198_Tet1kd_vs_v6.5_DEXSeq_results.txt.gz anti-conservative 0.67 NA NA NA GPL10010 Mus musculus 10090 NA NA
GSE50198 GSE50198_Tet1kd_vs_v6.5_DEXSeq_results.txt.gz anti-conservative 0.67 NA NA NA GPL14602 Mus musculus 10090 NA NA
GSE50198 GSE50198_Tet2kd_vs_v6.5_DESeq_results.txt.gz-set-1 anti-conservative 0.57 anti-conservative 0.31 GPL10010 Mus musculus 10090 NA NA
GSE50198 GSE50198_Tet2kd_vs_v6.5_DESeq_results.txt.gz-set-1 anti-conservative 0.57 anti-conservative 0.31 GPL14602 Mus musculus 10090 NA NA
GSE50198 GSE50198_Tet2kd_vs_v6.5_DEXSeq_results.txt.gz anti-conservative 0.68 NA NA NA GPL10010 Mus musculus 10090 NA NA
GSE50198 GSE50198_Tet2kd_vs_v6.5_DEXSeq_results.txt.gz anti-conservative 0.68 NA NA NA GPL14602 Mus musculus 10090 NA NA
GSE52058 GSE52058_Cuffdiff_Dana_TestisOvary.gene_exp.diff.gz anti-conservative 0.35 NA NA NA GPL13309 Drosophila ananassae 7217 NA NA
GSE52058 GSE52058_Cuffdiff_Dana_TestisOvary.gene_exp.diff.gz anti-conservative 0.35 NA NA NA GPL13310 Drosophila pseudoobscura 7237 NA NA
GSE52058 GSE52058_Cuffdiff_Dana_TestisOvary.gene_exp.diff.gz anti-conservative 0.35 NA NA NA GPL15872 Drosophila yakuba 7245 NA NA
GSE52058 GSE52058_Cuffdiff_Dana_TestisOvary.gene_exp.diff.gz anti-conservative 0.35 NA NA NA GPL17883 Drosophila pseudoobscura 7237 NA NA
GSE52058 GSE52058_Cuffdiff_Dpse_TestisOvary.gene_exp.diff.gz anti-conservative 0.42 NA NA NA GPL13309 Drosophila ananassae 7217 NA NA
GSE52058 GSE52058_Cuffdiff_Dpse_TestisOvary.gene_exp.diff.gz anti-conservative 0.42 NA NA NA GPL13310 Drosophila pseudoobscura 7237 NA NA
GSE52058 GSE52058_Cuffdiff_Dpse_TestisOvary.gene_exp.diff.gz anti-conservative 0.42 NA NA NA GPL15872 Drosophila yakuba 7245 NA NA
GSE52058 GSE52058_Cuffdiff_Dpse_TestisOvary.gene_exp.diff.gz anti-conservative 0.42 NA NA NA GPL17883 Drosophila pseudoobscura 7237 NA NA
GSE55528 GSE55528_gene_exp_PA.diff.gz anti-conservative 0.56 NA NA NA GPL18362 Pseudomonas aeruginosa MPAO1/P1 1131757 NA NA
GSE55528 GSE55528_gene_exp_PA.diff.gz anti-conservative 0.56 NA NA NA GPL18363 Staphylococcus aureus subsp. aureus str. Newman 426430 NA NA
GSE55528 GSE55528_gene_exp_SA.diff.gz anti-conservative 0.68 NA NA NA GPL18362 Pseudomonas aeruginosa MPAO1/P1 1131757 NA NA
GSE55528 GSE55528_gene_exp_SA.diff.gz anti-conservative 0.68 NA NA NA GPL18363 Staphylococcus aureus subsp. aureus str. Newman 426430 NA NA
GSE56132 GSE56132_Pm_Si_expression.txt.gz-set-0 anti-conservative 0.67 NA NA NA GPL18457 Thalassiosira pseudonana 35128 NA NA
GSE56132 GSE56132_Pm_Si_expression.txt.gz-set-0 anti-conservative 0.67 NA NA NA GPL18458 Fragilariopsis cylindrus 186039 NA NA
GSE56132 GSE56132_Pm_Si_expression.txt.gz-set-0 anti-conservative 0.67 NA NA NA GPL18459 Pseudo-nitzschia multiseries 37319 NA NA
GSE56132 GSE56132_Pm_Si_expression.txt.gz-set-1 anti-conservative 0.57 NA NA NA GPL18457 Thalassiosira pseudonana 35128 NA NA
GSE56132 GSE56132_Pm_Si_expression.txt.gz-set-1 anti-conservative 0.57 NA NA NA GPL18458 Fragilariopsis cylindrus 186039 NA NA
GSE56132 GSE56132_Pm_Si_expression.txt.gz-set-1 anti-conservative 0.57 NA NA NA GPL18459 Pseudo-nitzschia multiseries 37319 NA NA
GSE58052 GSE58052_N.europaea_co-culture_over_single-culture.txt.gz anti-conservative 0.61 NA NA NA GPL18736 Nitrosomonas europaea 915 NA NA
GSE58052 GSE58052_N.europaea_co-culture_over_single-culture.txt.gz anti-conservative 0.61 NA NA NA GPL18737 Nitrobacter winogradskyi 913 Nitrosomonas europaea 915
GSE58052 GSE58052_N.europaea_co-culture_over_single-culture.txt.gz anti-conservative 0.61 NA NA NA GPL18738 Nitrobacter winogradskyi 913 Nitrosomonas europaea 915
GSE58865 GSE58865_Hyphae_vs_Oidia_DESeq_results.txt.gz anti-conservative 0.46 anti-conservative 0.03 GPL17162 Coprinopsis cinerea 5346 NA NA
GSE58865 GSE58865_Hyphae_vs_Oidia_DESeq_results.txt.gz anti-conservative 0.46 anti-conservative 0.03 GPL18872 Coprinopsis cinerea 5346 NA NA
GSE68176 GSE68176_Ophio1_1.gene_exp.diff.gz anti-conservative 0.56 NA NA NA GPL20096 Camponotus castaneus 105051 Ophiocordyceps unilateralis 268505
GSE68176 GSE68176_Ophio1_1.gene_exp.diff.gz anti-conservative 0.56 NA NA NA GPL20097 Camponotus castaneus 105051 Ophiocordyceps unilateralis 268505
GSE68176 GSE68176_Ophio1_1.gene_exp.diff.gz anti-conservative 0.56 NA NA NA GPL20098 Ophiocordyceps unilateralis 268505 NA NA
Table 5: SRP and related stats for anti-conservative P value histograms. pi0 was calculated using limma::propTrueNull() function.
Accession suppdata_id Histogram Type SRP pi0 fp rs ud Histogram after filter Type after filter SRP after filter pi0 after filter fp after filter rs after filter ud after filter
GSE32038 GSE32038_cds.diff.gz anti-conservative 0.95 0.07 528 9578 485 NA NA NA NA NA NA NA
GSE32038 GSE32038_promoters.diff.gz anti-conservative 0.95 0.05 683 12342 669 NA NA NA NA NA NA NA
GSE32038 GSE32038_splicing.diff.gz anti-conservative 0.96 0.06 824 14978 708 NA NA NA NA NA NA NA
GSE33141 GSE33141_BWADETsKOvsWT2.xls.gz-sheet-DETs-FC1.5-pval0.05 anti-conservative 0.96 0.01 71 1291 63 NA NA NA NA NA NA NA
GSE33141 GSE33141_TopHatDETsKOvsWT.xls.gz anti-conservative 0.96 0.01 163 2975 125 NA NA NA NA NA NA NA
GSE33736 GSE33736_HAmCqG0_G8expression.txt.gz anti-conservative 0.84 0.60 339 5415 1209 NA NA NA NA NA NA NA
GSE36781 GSE36781_gene_exp_diff.txt.gz anti-conservative NA 0.96 NA NA NA NA NA NA NA NA NA NA
GSE36959 GSE36959_gene_exp_diff.txt.gz anti-conservative 0.78 0.64 177 2630 936 NA NA NA NA NA NA NA
GSE37001 GSE37001_DEgenes.txt.gz anti-conservative 0.95 0.00 99 1788 95 anti-conservative 0.95 0.00 52 938 52
GSE37001 GSE37001_DEintrons.txt.gz anti-conservative 0.95 0.00 134 2412 133 anti-conservative 0.95 0.00 102 1842 102
GSE37001 GSE37001_DEisoforms.txt.gz anti-conservative 0.95 0.00 363 6562 342 NA NA NA NA NA NA NA
GSE38764 GSE38764_DESeq.nbVsneuron-orig-FDR0.01.txt.gz anti-conservative 0.95 0.00 177 3190 174 anti-conservative 0.95 0.00 86 1561 86
GSE41367 GSE41367_brenneri_gns.expr.txt.gz anti-conservative 0.58 0.36 412 4561 5599 NA NA NA NA NA NA NA
GSE41367 GSE41367_brenneri_soap.expr.txt.gz anti-conservative 0.60 0.37 1530 17465 19329 NA NA NA NA NA NA NA
GSE41367 GSE41367_briggsae_gns.expr.txt.gz anti-conservative 0.79 0.33 546 8219 2733 NA NA NA NA NA NA NA
GSE41367 GSE41367_briggsae_soap.expr.txt.gz anti-conservative 0.79 0.35 608 9078 3142 NA NA NA NA NA NA NA
GSE41367 GSE41367_elegans_gns.expr.txt.gz anti-conservative 0.73 0.30 513 7107 3612 NA NA NA NA NA NA NA
GSE41367 GSE41367_elegans_soap.expr.txt.gz anti-conservative 0.72 0.26 677 9227 5078 NA NA NA NA NA NA NA
GSE41367 GSE41367_japonica_gns.expr.txt.gz anti-conservative 0.76 0.29 556 8045 3323 NA NA NA NA NA NA NA
GSE41367 GSE41367_japonica_soap.expr.txt.gz anti-conservative 0.70 0.29 1921 25699 15337 NA NA NA NA NA NA NA
GSE41367 GSE41367_remanei_gns.expr.txt.gz anti-conservative 0.75 0.27 685 9745 4381 NA NA NA NA NA NA NA
GSE41367 GSE41367_remanei_soap.expr.txt.gz anti-conservative 0.73 0.25 1452 20220 10043 NA NA NA NA NA NA NA
GSE41590 GSE41590_Gene_expression.txt.gz anti-conservative 0.96 0.01 90 1631 74 anti-conservative 0.96 0.01 62 1121 52
GSE41766 GSE41766_IBH1-Ox_vs_Col.txt.gz anti-conservative 0.95 0.00 77 1398 75 anti-conservative 0.95 0.00 51 919 50
GSE41873 GSE41873_FPKM_all_genes_from_CuffDiff.txt.gz anti-conservative 0.80 0.74 59 899 278 NA NA NA NA NA NA NA
GSE43189 GSE43189_processed_h99_rim101.csv.gz anti-conservative 0.84 0.46 218 3472 800 NA NA NA NA NA NA NA
GSE43650 GSE43650_gene_exp_diff_sig.txt.gz anti-conservative 0.95 0.00 119 2153 114 NA NA NA NA NA NA NA
GSE44457 GSE44457_Human_transcriptome_deg.txt.gz anti-conservative 0.95 0.00 524 9463 523 NA NA NA NA NA NA NA
GSE45788 GSE45788_S72_2_RefII_S72_1_Emf_exp.cuff.gz anti-conservative 0.82 0.83 16 253 68 NA NA NA NA NA NA NA
GSE48166 GSE48166_Cufflinks_FPKM.txt.gz anti-conservative NA 0.95 NA NA NA NA NA NA NA NA NA NA
GSE48671 GSE48671_all.GeneDiffExp.txt.gz-set-0 anti-conservative 0.90 0.27 529 9072 1078 NA NA NA NA NA NA NA
GSE48671 GSE48671_all.GeneDiffExp.txt.gz-set-1 anti-conservative 0.92 0.16 624 10909 1027 NA NA NA NA NA NA NA
GSE48812 GSE48812_24h_LNCAP_SFN.diff.txt.gz-set-0 anti-conservative 0.95 0.00 136 2456 130 NA NA NA NA NA NA NA
GSE48812 GSE48812_24h_LNCAPvsPC3.diff.txt.gz-set-0 anti-conservative 0.94 0.00 480 8593 570 NA NA NA NA NA NA NA
GSE48812 GSE48812_24h_PC3_SFN.diff.txt.gz-set-0 anti-conservative 0.95 0.00 191 3449 181 NA NA NA NA NA NA NA
GSE48812 GSE48812_24h_PREC_SFN.diff.txt.gz-set-0 anti-conservative 0.95 0.00 173 3134 164 NA NA NA NA NA NA NA
GSE48812 GSE48812_24h_PRECvsLNCAP.diff.txt.gz-set-0 anti-conservative 0.95 0.00 494 8880 545 NA NA NA NA NA NA NA
GSE48812 GSE48812_24h_PRECvsPC3.diff.txt.gz-set-0 anti-conservative 0.95 0.00 453 8143 490 NA NA NA NA NA NA NA
GSE48812 GSE48812_6h_LNCAP_SFN.diff.txt.gz-set-0 anti-conservative 0.95 0.00 147 2662 140 NA NA NA NA NA NA NA
GSE48812 GSE48812_6h_LNCAPvsPC3.diff.txt.gz-set-0 anti-conservative 0.95 0.00 486 8743 526 NA NA NA NA NA NA NA
GSE48812 GSE48812_6h_PC3_SFN.diff.txt.gz-set-0 anti-conservative 0.95 0.00 157 2848 150 NA NA NA NA NA NA NA
GSE48812 GSE48812_6h_PREC_SFN.diff.txt.gz-set-0 anti-conservative 0.95 0.00 171 3096 161 NA NA NA NA NA NA NA
GSE48812 GSE48812_6h_PRECvsLNCAP.diff.txt.gz-set-0 anti-conservative 0.94 0.00 430 7698 500 NA NA NA NA NA NA NA
GSE48812 GSE48812_6h_PRECvsPC3.diff.txt.gz-set-0 anti-conservative 0.94 0.00 373 6675 437 NA NA NA NA NA NA NA
GSE50535 GSE50535_diffexp_1.txt.gz-set-0 anti-conservative 0.99 0.63 460 8686 51 NA NA NA NA NA NA NA
GSE50535 GSE50535_diffexp_1.txt.gz-set-1 anti-conservative 0.97 0.64 434 7967 290 NA NA NA NA NA NA NA
GSE50535 GSE50535_diffexp_2.txt.gz anti-conservative 0.82 0.56 573 8880 2472 NA NA NA NA NA NA NA
GSE50535 GSE50535_diffexp_3.txt.gz-set-0 anti-conservative 0.88 0.61 562 9412 1447 NA NA NA NA NA NA NA
GSE50535 GSE50535_diffexp_3.txt.gz-set-1 anti-conservative 0.87 0.30 997 16488 2831 NA NA NA NA NA NA NA
GSE50708 GSE50708_DE_result.txt.gz anti-conservative 0.87 0.32 411 6756 1207 NA NA NA NA NA NA NA
GSE51037 GSE51037_Untreated_Nitrate_Processed_CunninghamBussel.xlsx.gz anti-conservative NA 0.90 NA NA NA NA NA NA NA NA NA NA
GSE51645 GSE51645_DE_processed_data.txt.gz anti-conservative 0.83 0.76 60 951 240 NA NA NA NA NA NA NA
GSE51645 GSE51645_ASE_processed_data.txt.gz anti-conservative NA 0.98 NA NA NA NA NA NA NA NA NA NA
GSE52058 GSE52058_Cuffdiff_Dana_TestisOvary.gene_exp.diff.gz anti-conservative 0.96 0.35 521 9504 420 NA NA NA NA NA NA NA
GSE52058 GSE52058_Cuffdiff_Dpse_TestisOvary.gene_exp.diff.gz anti-conservative 0.94 0.42 471 8400 577 NA NA NA NA NA NA NA
GSE52080 GSE52080_processed_data_pvalue-filtered.txt.gz anti-conservative 0.95 0.00 67 1216 62 NA NA NA NA NA NA NA
GSE52153 GSE52153_czt-1DMSOvsczt-1STS.txt.gz anti-conservative 0.92 0.55 213 3726 339 NA NA NA NA NA NA NA
GSE52153 GSE52153_wtDMSOvswtSTS.txt.gz anti-conservative 0.95 0.71 139 2512 135 NA NA NA NA NA NA NA
GSE53040 GSE53040_wtDMSOvswtXP13.txt.gz anti-conservative 0.86 0.69 135 2208 407 NA NA NA NA NA NA NA
GSE53265 GSE53265_DESeq.PBNbVsLBNb-orig-FDR0.01.txt.gz anti-conservative 0.95 0.00 98 1768 97 anti-conservative 0.95 0.00 64 1162 64
GSE53265 GSE53265_DESeq.PBNbVsPBNbMed27IR-orig-FDR0.01.txt.gz anti-conservative 0.95 0.00 80 1442 79 anti-conservative 0.95 0.00 52 943 52
GSE54440 GSE54440_WT_Z2_RNAseq_rep2.txt.gz anti-conservative 0.76 0.51 194 2790 1178 NA NA NA NA NA NA NA
GSE54846 GSE54846_130529.DESeq.120813.combined-htseq-Luc123-m1_123.HGNC.protein_coding.rsgt20.txt.gz anti-conservative 0.98 0.79 124 2310 49 anti-conservative 0.80 0.45 51 770 245
GSE55528 GSE55528_gene_exp_PA.diff.gz anti-conservative 0.86 0.56 112 1825 346 NA NA NA NA NA NA NA
GSE55528 GSE55528_gene_exp_SA.diff.gz anti-conservative 0.83 0.68 37 584 141 NA NA NA NA NA NA NA
GSE56132 GSE56132_Pm_Si_expression.txt.gz-set-0 anti-conservative 0.95 0.67 278 5010 296 NA NA NA NA NA NA NA
GSE56132 GSE56132_Pm_Si_expression.txt.gz-set-1 anti-conservative 0.94 0.57 358 6353 470 NA NA NA NA NA NA NA
GSE56169 GSE56169_normalized_RNASeq_Ctrl_vs_E2a.txt.gz anti-conservative 0.95 0.37 270 4859 296 NA NA NA NA NA NA NA
GSE56253 GSE56253_GeneSpring_NGS_processed_data.txt.gz anti-conservative 0.95 0.00 531 9614 506 NA NA NA NA NA NA NA
GSE56439 GSE56439_DiffExprAnalysis_1.5_fold_.xlsx.gz-sheet-ABA vs CK(>1.5 fold) anti-conservative 0.95 0.00 133 2405 133 NA NA NA NA NA NA NA
GSE56439 GSE56439_DiffExprAnalysis_1.5_fold_.xlsx.gz-sheet-water defici VS ABA (>1.5 fold) anti-conservative 0.95 0.00 262 4722 260 NA NA NA NA NA NA NA
GSE57217 GSE57217_bck1wt_geneexp_diff.txt.gz anti-conservative 0.77 0.73 82 1191 467 NA NA NA NA NA NA NA
GSE57217 GSE57217_mkk2wt_geneexp_diff.txt.gz anti-conservative 0.90 0.80 69 1183 144 NA NA NA NA NA NA NA
GSE57217 GSE57217_mpk1wt_geneexp_diff.txt.gz anti-conservative 0.80 0.77 72 1095 331 NA NA NA NA NA NA NA
GSE57254 GSE57254_WT_KD_CELF1_Fold_change.txt.gz anti-conservative 0.95 0.00 64 1161 61 NA NA NA NA NA NA NA
GSE57580 GSE57580_different_expressed_gene_list_between_gynoecious_vs_monoecious.txt.gz anti-conservative 0.95 0.00 53 955 53 NA NA NA NA NA NA NA
GSE59335 GSE59335_exons_sig_anno_total.txt.gz anti-conservative 0.95 0.00 304 5497 298 NA NA NA NA NA NA NA
GSE59571 GSE59571_S13113_genesdiff.xlsx anti-conservative 0.90 0.70 381 6505 808 NA NA NA NA NA NA NA
GSE60968 GSE60968_VEC_vs_CRE_DE.txt.gz anti-conservative 0.86 0.38 370 6019 1174 NA NA NA NA NA NA NA
GSE61491 GSE61491_CHDKD_differential_expression.txt.gz anti-conservative NA 0.95 NA NA NA NA NA NA NA NA NA NA
GSE62200 GSE62200_Table_S4.xls.gz-sheet-Table S5 N2Y6-M VS LYP9-M anti-conservative NA 0.81 NA NA NA NA NA NA NA NA NA NA
GSE62448 GSE62448_merged_normalized_counts.tab.gz-set-0 anti-conservative 0.95 0.00 157 2829 157 anti-conservative 0.95 0.00 62 1110 61
GSE62448 GSE62448_merged_normalized_counts.tab.gz-set-1 anti-conservative 0.95 0.00 157 2829 157 anti-conservative 0.95 0.00 62 1110 61
GSE62785 GSE62785_Table_S1_Genes_differentially_expressed_in_hns_mutant_in_mid-exponential_phase.xls.gz-sheet-status = OK anti-conservative NA 0.86 NA NA NA NA NA NA NA NA NA NA
GSE62785 GSE62785_Table_S2_Genes_differentially_expressed_in_hns_mutant_in_early_stationary_phase.xls.gz-sheet-status = ok anti-conservative NA 0.78 NA NA NA NA NA NA NA NA NA NA
GSE63141 GSE63141_eTMglc_gene_exp.diff.gz anti-conservative NA 0.95 NA NA NA NA NA NA NA NA NA NA
GSE63141 GSE63141_eTMgly_gene_exp.diff.gz anti-conservative NA 0.78 NA NA NA NA NA NA NA NA NA NA
GSE63948 GSE63948_Supplemental_Table2_DeepSeq_Fanourgakis_etAl.xls.gz-sheet-short 3’UTR transcripts(<350nt) anti-conservative NA 0.90 NA NA NA NA NA NA NA NA NA NA
GSE63948 GSE63948_Supplemental_Table2_DeepSeq_Fanourgakis_etAl.xls.gz-sheet-medium 3’UTR transcripts anti-conservative NA 0.95 NA NA NA NA NA NA NA NA NA NA
GSE63948 GSE63948_Supplemental_Table2_DeepSeq_Fanourgakis_etAl.xls.gz-sheet-long 3’UTR transcripts(>1500nt) anti-conservative NA 0.87 NA NA NA NA NA NA NA NA NA NA
GSE64242 GSE64242_cufdiff_isoform_exp.diff.gz anti-conservative NA 0.93 NA NA NA NA NA NA NA NA NA NA
GSE64359 GSE64359_DE_dfwt_combined.txt.gz anti-conservative 0.95 0.00 67 1217 65 NA NA NA NA NA NA NA
GSE64413 GSE64413_orf57_pval_cutoff_0.001.csv.gz anti-conservative 0.95 0.00 122 2211 121 NA NA NA NA NA NA NA
GSE64413 GSE64413_orf57_pval_cutoff_0.05.csv.gz anti-conservative 0.99 0.04 364 6818 95 NA NA NA NA NA NA NA
GSE64513 GSE64513_FOXD3_vs_Control_gene_exp_diff_anno.txt.gz anti-conservative 0.81 0.61 205 3153 926 NA NA NA NA NA NA NA
GSE64513 GSE64513_FOXD3_vs_Control_gene_exp_diff_sig_anno.txt.gz anti-conservative 0.95 0.00 53 956 53 NA NA NA NA NA NA NA
GSE65688 GSE65688_gene_exp.diff_GFP_TAT_Gene.csv.gz anti-conservative 0.97 0.02 169 3132 90 NA NA NA NA NA NA NA
GSE66506 GSE66506_DE_analysis_010714.xlsx-sheet-SigGenes anti-conservative 0.95 0.00 71 1280 70 NA NA NA NA NA NA NA
GSE67334 GSE67334_TFH.Vs.TH1.DESeq_Analysis_DE_Genes.txt.gz anti-conservative NA 0.79 NA NA NA anti-conservative 0.77 0.56 46 672 256
GSE67646 GSE67646_DESeq_1.10.1.txt.gz anti-conservative NA 0.67 NA NA NA anti-conservative 0.89 0.25 71 1204 171
GSE67674 GSE67674_RNA-seq_analysis_PBSDMSOvsPBSGSK-J4.txt.gz anti-conservative NA 0.95 NA NA NA NA NA NA NA NA NA NA
GSE67756 GSE67756_LA2A-vs-LC2A.compare.txt.gz anti-conservative 0.82 0.42 1383 21576 5729 NA NA NA NA NA NA NA
GSE67756 GSE67756_LA2A-vs-LC2A.diff_annot.txt.gz anti-conservative 0.95 0.00 531 9588 531 NA NA NA NA NA NA NA
GSE67756 GSE67756_LB2A-vs-LA2A.compare.txt.gz anti-conservative 0.81 0.44 1339 20599 5993 NA NA NA NA NA NA NA
GSE67756 GSE67756_LB2A-vs-LA2A.diff_annot.txt.gz anti-conservative 0.95 0.00 474 8553 473 NA NA NA NA NA NA NA
GSE67756 GSE67756_LB2A-vs-LC2A.compare.txt.gz anti-conservative 0.79 0.53 1076 16058 5579 NA NA NA NA NA NA NA
GSE67756 GSE67756_LB2A-vs-LC2A.diff_annot.txt.gz anti-conservative 0.95 0.00 268 4829 267 NA NA NA NA NA NA NA
GSE67756 GSE67756_LB2A-vs-LF1A.compare.txt.gz anti-conservative 0.80 0.49 1206 18410 5618 NA NA NA NA NA NA NA
GSE67756 GSE67756_LB2A-vs-LF1A.diff_annot.txt.gz anti-conservative 0.95 0.00 381 6880 381 NA NA NA NA NA NA NA
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_mTECs_vs_sp-DCs.csv.gz anti-conservative 0.89 0.29 863 14658 1950 anti-conservative 0.92 0.13 88 1527 153
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_mTECs_vs_t-DCs.csv.gz anti-conservative 0.89 0.27 847 14329 1987 anti-conservative 0.93 0.11 91 1606 140
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_sp-DCs_vs_mTECs.csv.gz anti-conservative 0.89 0.29 863 14658 1950 anti-conservative 0.92 0.13 88 1527 153
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_sp-DCs_vs_t-DCs.csv.gz anti-conservative 0.97 0.52 560 10294 367 anti-conservative 0.90 0.22 77 1316 165
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_t-DCs_vs_mTECs.csv.gz anti-conservative 0.89 0.27 847 14329 1987 anti-conservative 0.93 0.11 91 1606 140
GSE67834 GSE67834_DESeq2_genes_diffexp_by_fc_t-DCs_vs_sp-DCs.csv.gz anti-conservative 0.97 0.52 560 10294 367 anti-conservative 0.90 0.22 77 1316 165
GSE68176 GSE68176_Ophio1_1.gene_exp.diff.gz anti-conservative 0.93 0.56 503 8889 728 NA NA NA NA NA NA NA
GSE68846 GSE68846_KO_vs_Control_05.csv.gz anti-conservative 0.95 0.00 66 1194 65 NA NA NA NA NA NA NA
GSE68846 GSE68846_KO_vs_Control_10.csv.gz anti-conservative 0.95 0.00 81 1463 76 NA NA NA NA NA NA NA
GSE68846 GSE68846_KO_vs_Control_15.csv.gz anti-conservative 0.96 0.01 94 1716 82 NA NA NA NA NA NA NA
GSE68846 GSE68846_KO_vs_Control_20.csv.gz anti-conservative 0.96 0.01 106 1930 85 anti-conservative 0.96 0.01 51 933 41
GSE69001 GSE69001_DE_list_planktonic_v_biolfim.txt.gz anti-conservative 0.86 0.44 93 1510 289 NA NA NA NA NA NA NA
GSE69001 GSE69001_DE_list_planktonic_v_plate.txt.gz anti-conservative 0.88 0.33 112 1882 286 NA NA NA NA NA NA NA
GSE69001 GSE69001_DE_list_plate_v_biofilm.txt.gz anti-conservative 0.87 0.38 103 1700 299 NA NA NA NA NA NA NA
GSE70069 GSE70069_Deregulated_genes_upon_knock-down_of_Setdb1_in_C2C12.txt.gz anti-conservative 0.95 0.00 570 10281 569 anti-conservative 0.95 0.00 103 1864 103
GSE70290 GSE70290_PV_Transcripts.txt.gz anti-conservative 0.96 0.01 225 4108 175 NA NA NA NA NA NA NA
GSE70488 GSE70488_Day_vs_Night_sSeq.txt.gz anti-conservative 0.48 0.35 400 3632 8299 NA NA NA NA NA NA NA
GSE70876 GSE70876_Additional_file_4.xls.gz anti-conservative 0.41 0.32 23 181 628 NA NA NA NA NA NA NA
GSE71093 GSE71093_a456_vs_a123_sig.txt.gz anti-conservative 0.97 0.02 62 1139 42 NA NA NA NA NA NA NA
GSE71185 GSE71185_NSD3_Knockdown_RNASeq_Cuffdiff_NSR.txt.gz anti-conservative 0.85 0.90 44 707 142 NA NA NA NA NA NA NA
GSE71185 GSE71185_NSD3_Knockdown_RNASeq_Cuffdiff_PolyA.txt.gz anti-conservative 0.85 0.77 78 1260 266 NA NA NA NA NA NA NA
GSE71539 GSE71539_TP0vsTP23_gene_results.txt.gz anti-conservative 0.81 0.86 67 1036 292 NA NA NA NA NA NA NA
GSE71539 GSE71539_TP0vsTP23_tag_results.txt.gz anti-conservative 0.82 0.85 205 3177 873 NA NA NA NA NA NA NA
GSE71710 GSE71710_siDGCR8_v_siSCR_DESeq_gencode.all.symbol.txt.gz anti-conservative 0.77 0.84 85 1244 469 anti-conservative 0.58 0.79 16 175 220
GSE71902 GSE71902_WILD-vs-CPH2.txt.gz anti-conservative 0.65 0.83 36 451 369 NA NA NA NA NA NA NA
GSE71916 GSE71916_Expression_Cufflinks_siRbfox1_3+EGFP_compared_to_siNT+EGFP.txt.gz anti-conservative NA 0.96 NA NA NA NA NA NA NA NA NA NA
GSE72293 GSE72293_E17_vs_P9_filtered_rpkm5.txt.gz-set-0 anti-conservative 0.95 0.00 98 1777 93 NA NA NA NA NA NA NA
GSE72293 GSE72293_E17_vs_P9_filtered_rpkm5.txt.gz-set-1 anti-conservative 0.95 0.00 98 1779 95 NA NA NA NA NA NA NA
GSE72491 GSE72491_PCBP2_KO_v_WT_DESeq_gencode.all.name.txt.gz anti-conservative 0.78 0.72 177 2629 925 anti-conservative 0.76 0.68 25 369 149
GSE73323 GSE73323_gene_expression_profiles.txt.gz anti-conservative 0.95 0.00 163 2948 148 NA NA NA NA NA NA NA
GSE73376 GSE73376_full_list_edgeR_annotated_DGCR8.txt.gz anti-conservative 0.83 0.80 182 2865 702 NA NA NA NA NA NA NA
GSE73376 GSE73376_full_list_edgeR_annotated_RRP6.txt.gz anti-conservative 0.78 0.82 155 2292 829 NA NA NA NA NA NA NA
GSE73887 GSE73887_C6661_EBNA1_vs_C6661_IgG.txt.gz-set-0 anti-conservative 0.95 0.00 536 9666 535 NA NA NA NA NA NA NA
GSE73887 GSE73887_C6661_EBNA1_vs_C6661_IgG.txt.gz-set-1 anti-conservative 0.95 0.00 536 9666 535 NA NA NA NA NA NA NA
GSE73887 GSE73887_C6661_EBNA1_vs_LCL_EBNA1.txt.gz-set-0 anti-conservative 0.95 0.00 694 12525 694 NA NA NA NA NA NA NA
GSE73887 GSE73887_C6661_EBNA1_vs_LCL_EBNA1.txt.gz-set-1 anti-conservative 0.95 0.00 694 12525 693 NA NA NA NA NA NA NA
GSE73887 GSE73887_C6661_EBNA1_vs_MUTU_EBNA1.txt.gz-set-0 anti-conservative 0.95 0.00 683 12325 682 NA NA NA NA NA NA NA
GSE73887 GSE73887_C6661_EBNA1_vs_MUTU_EBNA1.txt.gz-set-1 anti-conservative 0.95 0.00 683 12325 682 NA NA NA NA NA NA NA
GSE73887 GSE73887_C6661_EBNA1_vs_RAJI_EBNA1.txt.gz-set-0 anti-conservative 0.95 0.00 166 3001 166 NA NA NA NA NA NA NA
GSE73887 GSE73887_C6661_EBNA1_vs_RAJI_EBNA1.txt.gz-set-1 anti-conservative 0.95 0.00 166 3001 166 NA NA NA NA NA NA NA
GSE73887 GSE73887_C6661_EBNA1_vs_combine_IgG.txt.gz-set-0 anti-conservative 0.95 0.00 485 8758 485 NA NA NA NA NA NA NA
GSE73887 GSE73887_C6661_EBNA1_vs_combine_IgG.txt.gz-set-1 anti-conservative 0.95 0.00 485 8758 485 NA NA NA NA NA NA NA
GSE73887 GSE73887_C6661_EBNA1_vs_combine_IgG_3.txt.gz-set-0 anti-conservative 0.95 0.00 433 7812 432 NA NA NA NA NA NA NA
GSE73887 GSE73887_C6661_EBNA1_vs_combine_IgG_3.txt.gz-set-1 anti-conservative 0.95 0.00 433 7812 433 NA NA NA NA NA NA NA
GSE73887 GSE73887_LCL_EBNA1_vs_C6661_EBNA1.txt.gz-set-0 anti-conservative 0.95 0.00 379 6844 379 NA NA NA NA NA NA NA
GSE73887 GSE73887_LCL_EBNA1_vs_C6661_EBNA1.txt.gz-set-1 anti-conservative 0.95 0.00 379 6844 379 NA NA NA NA NA NA NA
GSE73887 GSE73887_LCL_EBNA1_vs_LCL_IgG.txt.gz-set-0 anti-conservative 0.95 0.00 913 16478 912 NA NA NA NA NA NA NA
GSE73887 GSE73887_LCL_EBNA1_vs_LCL_IgG.txt.gz-set-1 anti-conservative 0.95 0.00 913 16479 912 NA NA NA NA NA NA NA
GSE73887 GSE73887_LCL_EBNA1_vs_MUTU_EBNA1.txt.gz-set-0 anti-conservative 0.95 0.00 979 17665 978 NA NA NA NA NA NA NA
GSE73887 GSE73887_LCL_EBNA1_vs_MUTU_EBNA1.txt.gz-set-1 anti-conservative 0.95 0.00 979 17666 978 NA NA NA NA NA NA NA
GSE73887 GSE73887_LCL_EBNA1_vs_combine_IgG.txt.gz-set-0 anti-conservative 0.95 0.00 777 14017 776 NA NA NA NA NA NA NA
GSE73887 GSE73887_LCL_EBNA1_vs_combine_IgG.txt.gz-set-1 anti-conservative 0.95 0.00 777 14017 776 NA NA NA NA NA NA NA
GSE73887 GSE73887_LCL_EBNA1_vs_combine_IgG_3.txt.gz-set-0 anti-conservative 0.95 0.00 839 15151 839 NA NA NA NA NA NA NA
GSE73887 GSE73887_LCL_EBNA1_vs_combine_IgG_3.txt.gz-set-1 anti-conservative 0.95 0.00 839 15151 839 NA NA NA NA NA NA NA
GSE73887 GSE73887_MUTU_EBNA1_vs_C6661_EBNA1.txt.gz-set-0 anti-conservative 0.95 0.00 161 2912 161 NA NA NA NA NA NA NA
GSE73887 GSE73887_MUTU_EBNA1_vs_C6661_EBNA1.txt.gz-set-1 anti-conservative 0.95 0.00 161 2911 161 NA NA NA NA NA NA NA
GSE73887 GSE73887_MUTU_EBNA1_vs_LCL_EBNA1.txt.gz-set-0 anti-conservative 0.95 0.00 267 4817 267 NA NA NA NA NA NA NA
GSE73887 GSE73887_MUTU_EBNA1_vs_LCL_EBNA1.txt.gz-set-1 anti-conservative 0.95 0.00 267 4817 267 NA NA NA NA NA NA NA
GSE73887 GSE73887_MUTU_EBNA1_vs_MUTU_IgG.txt.gz-set-0 anti-conservative 0.95 0.00 988 17825 987 NA NA NA NA NA NA NA
GSE73887 GSE73887_MUTU_EBNA1_vs_MUTU_IgG.txt.gz-set-1 anti-conservative 0.95 0.00 988 17825 987 NA NA NA NA NA NA NA
GSE73887 GSE73887_MUTU_EBNA1_vs_combine_IgG.txt.gz-set-0 anti-conservative 0.95 0.00 648 11695 647 NA NA NA NA NA NA NA
GSE73887 GSE73887_MUTU_EBNA1_vs_combine_IgG.txt.gz-set-1 anti-conservative 0.95 0.00 648 11695 648 NA NA NA NA NA NA NA
GSE73887 GSE73887_MUTU_EBNA1_vs_combine_IgG_3.txt.gz-set-0 anti-conservative 0.95 0.00 643 11600 642 NA NA NA NA NA NA NA
GSE73887 GSE73887_MUTU_EBNA1_vs_combine_IgG_3.txt.gz-set-1 anti-conservative 0.95 0.00 643 11600 642 NA NA NA NA NA NA NA
GSE73887 GSE73887_RAJI_EBNA1_vs_C6661_EBNA1.txt.gz-set-0 anti-conservative 0.95 0.00 415 7491 414 NA NA NA NA NA NA NA
GSE73887 GSE73887_RAJI_EBNA1_vs_C6661_EBNA1.txt.gz-set-1 anti-conservative 0.95 0.00 415 7491 415 NA NA NA NA NA NA NA
GSE73887 GSE73887_RAJI_EBNA1_vs_LCL_EBNA1.txt.gz-set-0 anti-conservative 0.95 0.00 465 8394 465 NA NA NA NA NA NA NA
GSE73887 GSE73887_RAJI_EBNA1_vs_LCL_EBNA1.txt.gz-set-1 anti-conservative 0.95 0.00 465 8395 465 NA NA NA NA NA NA NA
GSE73887 GSE73887_RAJI_EBNA1_vs_MUTU_EBNA1.txt.gz-set-0 anti-conservative 0.95 0.00 410 7400 410 NA NA NA NA NA NA NA
GSE73887 GSE73887_RAJI_EBNA1_vs_MUTU_EBNA1.txt.gz-set-1 anti-conservative 0.95 0.00 410 7400 410 NA NA NA NA NA NA NA
GSE73887 GSE73887_RAJI_EBNA1_vs_RAJI_IgG.txt.gz-set-0 anti-conservative 0.95 0.00 52 936 52 NA NA NA NA NA NA NA
GSE73887 GSE73887_RAJI_EBNA1_vs_RAJI_IgG.txt.gz-set-1 anti-conservative 0.95 0.00 52 936 52 NA NA NA NA NA NA NA
GSE73887 GSE73887_RAJI_EBNA1_vs_combine_IgG.txt.gz-set-0 anti-conservative 0.95 0.00 368 6646 368 NA NA NA NA NA NA NA
GSE73887 GSE73887_RAJI_EBNA1_vs_combine_IgG.txt.gz-set-1 anti-conservative 0.95 0.00 368 6646 368 NA NA NA NA NA NA NA
GSE73887 GSE73887_RAJI_EBNA1_vs_combine_IgG_3.txt.gz-set-0 anti-conservative 0.95 0.00 370 6681 370 NA NA NA NA NA NA NA
GSE73887 GSE73887_RAJI_EBNA1_vs_combine_IgG_3.txt.gz-set-1 anti-conservative 0.95 0.00 370 6681 370 NA NA NA NA NA NA NA
GSE73893 GSE73893_DEseq-rip_significant_sites.txt.gz anti-conservative 0.95 0.00 76 1371 72 NA NA NA NA NA NA NA
GSE74103 GSE74103_Tobacco_FS_v_WT_DESeq_refGene.all.annotated.txt.gz anti-conservative 0.80 0.62 718 10868 3480 anti-conservative 0.84 0.53 31 488 112
GSE74103 GSE74103_Tobacco_G1_v_WT_DESeq_refGene.all.annotated.txt.gz anti-conservative 0.78 0.42 1061 15742 5653 anti-conservative 0.86 0.27 49 794 151
GSE74103 GSE74103_Tobacco_GS_v_WT_DESeq_refGene.all.annotated.txt.gz anti-conservative 0.84 0.29 1406 22506 4992 anti-conservative 0.90 0.23 54 919 110
GSE74171 GSE74171_processed_aging_data.txt.gz anti-conservative 0.96 0.01 205 3742 160 anti-conservative 0.95 0.00 54 984 50
GSE74929 GSE74929_Diff_Exp.txt.gz-set-0 anti-conservative 0.95 0.00 663 11991 640 NA NA NA NA NA NA NA
GSE75147 GSE75147_regulated.phf5a_kd_402.down.G166.list.txt.gz anti-conservative 0.94 0.02 84 1499 99 NA NA NA NA NA NA NA
GSE75147 GSE75147_regulated.phf5a_kd_861.down.0827.list.txt.gz anti-conservative 0.95 0.02 137 2473 133 NA NA NA NA NA NA NA
GSE75147 GSE75147_regulated.phf5a_kd_861.down.G166.list.txt.gz anti-conservative 0.95 0.01 282 5084 278 NA NA NA NA NA NA NA
GSE75147 GSE75147_regulated.phf5a_kd_861.up.G166.list.txt.gz anti-conservative 0.94 0.04 48 860 55 NA NA NA NA NA NA NA
GSE75731 GSE75731_ckvsd119a_gene_exp_diff.txt.gz anti-conservative 0.87 0.49 62 1024 169 NA NA NA NA NA NA NA
GSE75731 GSE75731_ckvsdrug_gene_exp_diff.txt.gz anti-conservative 0.91 0.64 46 785 88 NA NA NA NA NA NA NA
GSE75731 GSE75731_ckvsv149a_gene_exp_diff.txt.gz anti-conservative 0.95 0.73 36 659 36 NA NA NA NA NA NA NA
GSE75832 GSE75832_DifferentialExpression_groupwise_comparisons.xlsx-sheet-P14_P2_gene_exp_down anti-conservative NA 0.76 NA NA NA NA NA NA NA NA NA NA
GSE75878 GSE75878_promoters.diff.gz anti-conservative NA 0.44 NA NA NA NA NA NA NA NA NA NA
GSE75878 GSE75878_splicing.diff.gz anti-conservative NA 0.38 NA NA NA NA NA NA NA NA NA NA
GSE75962 GSE75962_control_vs_H2O2.DEseq.txt.gz anti-conservative 0.81 0.77 161 2460 740 anti-conservative 0.64 0.69 29 350 311
GSE75993 GSE75993_processed_data.xls.gz-sheet-1_WT_vs_KO_DESeq_All anti-conservative NA 0.94 NA NA NA NA NA NA NA NA NA NA
GSE77025 GSE77025_gene_exp.diff.gz anti-conservative 0.81 0.35 1198 18522 5197 NA NA NA NA NA NA NA
GSE77218 GSE77218_A3_A2.xlsx-sheet-diff_list anti-conservative 0.95 0.00 281 5072 281 NA NA NA NA NA NA NA
GSE77218 GSE77218_A4_A2.xlsx-sheet-diff_list anti-conservative 0.95 0.00 260 4689 260 NA NA NA NA NA NA NA
GSE77218 GSE77218_A4_A3.xlsx-sheet-diff_list anti-conservative 0.95 0.00 169 3051 169 NA NA NA NA NA NA NA
GSE77398 GSE77398_mal_all6_cuffdiff_genes.xls.gz anti-conservative 0.96 0.76 69 1256 56 NA NA NA NA NA NA NA
GSE77427 GSE77427_table_S1.xls.gz anti-conservative 0.95 0.00 51 914 51 NA NA NA NA NA NA NA
GSE77568 GSE77568_CHIP_DMSO_vs_JQ1.txt.gz anti-conservative 0.95 0.00 948 17109 948 NA NA NA NA NA NA NA
GSE77568 GSE77568_CHIP_DMSO_vs_input.txt.gz anti-conservative 0.95 0.00 1169 21096 1169 NA NA NA NA NA NA NA
GSE78824 GSE78824_Cuffdiff_transcript_differential_expression_testing.tab.gz anti-conservative NA 0.78 NA NA NA NA NA NA NA NA NA NA
GSE79039 GSE79039_Feske_Tcon_DKO_vs_WT_norm_counts_DE_expression_all.txt.gz anti-conservative 0.85 0.62 197 3163 681 anti-conservative 0.82 0.41 76 1194 312
GSE79039 GSE79039_Feske_Tfh_DKO_vs_WT_norm_counts_DE_expression_all.txt.gz anti-conservative 0.89 0.73 149 2517 356 anti-conservative 0.81 0.52 62 955 279
GSE79286 GSE79286_CYC2vsWT_Conj-2.5hr_RNA-Seq.xlsx-sheet-Significant-FULL anti-conservative 0.95 0.00 83 1504 80 NA NA NA NA NA NA NA
GSE79286 GSE79286_CYC2vsWT_Conj-2hr_RNA-Seq.xlsx-sheet-Significant-FULL anti-conservative 0.95 0.00 96 1735 91 NA NA NA NA NA NA NA
GSE79286 GSE79286_CYC2vsWT_Conj-2hr_RNA-Seq.xlsx-sheet-Significant-UP anti-conservative 0.95 0.00 65 1173 61 NA NA NA NA NA NA NA
GSE79286 GSE79286_CYC2vsWT_Conj-3.5hr_RNA-Seq.xlsx-sheet-Significant-FULL anti-conservative 0.95 0.00 65 1180 63 NA NA NA NA NA NA NA
GSE79820 GSE79820_all_de_cuffdiff.tsv.gz anti-conservative 0.95 0.00 94 1708 91 NA NA NA NA NA NA NA
GSE79916 GSE79916_Dataset_S1-JUM_output_for_differential_AS_analyses_of_PSIdeltaAB_and_full-length_PSI_male_fly_heads.xls.gz anti-conservative 0.93 0.13 275 4844 405 NA NA NA NA NA NA NA
GSE79916 GSE79916_Dataset_S4-DESeq2_output_for_differential_overall_gene_expression_level_analysis_of_PSIdeltaAB_and_full-length_PSI_male_fly_heads.xls.gz anti-conservative 0.95 0.00 68 1225 68 NA NA NA NA NA NA NA
GSE80135 GSE80135_siNeg_siProx_sig_results.csv.gz anti-conservative 0.87 0.79 137 2266 380 anti-conservative 0.77 0.50 39 571 215
GSE80176 GSE80176_HMLER_Ctrl_vs_DAC_Cuffdiff.txt.gz anti-conservative 0.95 0.00 100 1818 95 NA NA NA NA NA NA NA
GSE80264 GSE80264_Group_2_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-0 anti-conservative 0.95 0.01 161 2921 145 NA NA NA NA NA NA NA
GSE80264 GSE80264_Group_2_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-1 anti-conservative 0.95 0.00 161 2924 148 NA NA NA NA NA NA NA
GSE80264 GSE80264_Group_2_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-2 anti-conservative 0.94 0.02 156 2778 196 NA NA NA NA NA NA NA
GSE80264 GSE80264_Group_3_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-0 anti-conservative 0.95 0.01 167 3030 154 NA NA NA NA NA NA NA
GSE80264 GSE80264_Group_3_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-1 anti-conservative 0.93 0.03 158 2799 228 NA NA NA NA NA NA NA
GSE80264 GSE80264_Group_3_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-2 anti-conservative 0.95 0.00 168 3043 153 NA NA NA NA NA NA NA
GSE80349 GSE80349_results.txt.gz-set-0 anti-conservative 0.92 0.07 309 5422 481 NA NA NA NA NA NA NA
GSE81043 GSE81043_sh109_final_unique_DESeq_InfFixed_DiffExp.xlsx.gz anti-conservative 0.90 0.48 561 9634 1126 anti-conservative 0.92 0.14 89 1558 143
GSE81128 GSE81128_DESeq2_Results.txt.gz anti-conservative 0.89 0.32 507 8559 1217 anti-conservative 0.92 0.14 82 1435 130
GSE81237 GSE81237_DE_RNAseqseq_analysis_DESeq_TTP-AAvsGFP.csv.gz anti-conservative 0.80 0.66 192 2934 897 anti-conservative 0.75 0.59 39 560 241
GSE81237 GSE81237_DE_RNAseqseq_analysis_DESeq_TTP-AAvsTTP.csv.gz anti-conservative 0.82 0.56 251 3889 1072 anti-conservative 0.79 0.48 52 782 266
GSE81237 GSE81237_DE_RNAseqseq_analysis_DESeq_TTPvsGFP.csv.gz anti-conservative 0.79 0.75 128 1927 629 anti-conservative 0.73 0.69 28 387 202
GSE83218 GSE83218_HSC.txt.gz anti-conservative 0.76 0.88 47 671 281 anti-conservative 0.59 0.77 20 232 265
GSE83375 GSE83375_GB_glia.FPKM.txt.gz anti-conservative 0.80 0.66 198 3018 927 NA NA NA NA NA NA NA
GSE83541 GSE83541_All_Genes_ZnfTG_Muscle_DESeq2_38.txt.gz anti-conservative 0.94 0.82 142 2540 165 anti-conservative 0.78 0.70 9 130 46
GSE84481 GSE84481_3xTg.txt.gz anti-conservative NA 0.05 NA NA NA NA NA NA NA NA NA NA
GSE84481 GSE84481_Neuro2a.txt.gz-set-0 anti-conservative 0.99 0.04 378 7089 96 NA NA NA NA NA NA NA
GSE84481 GSE84481_Neuro2a.txt.gz-set-1 anti-conservative 0.99 0.04 378 7089 96 NA NA NA NA NA NA NA
GSE84737 GSE84737_All_genes_unfiltered_DE.txt.gz anti-conservative 0.79 0.45 321 4805 1632 NA NA NA NA NA NA NA
GSE84737 GSE84737_Genes_filtered_DE.txt.gz anti-conservative 0.80 0.47 226 3437 1082 NA NA NA NA NA NA NA
GSE85321 GSE85321_Supplemental_Table_4_YAR_vs_YAD_RNA_seq_.xls.gz-sheet-EV_YAD_YAR_isoformexp anti-conservative NA 0.46 NA NA NA NA NA NA NA NA NA NA
GSE85360 GSE85360_P140_Setd1b_DEGS_021015.txt.gz anti-conservative 0.95 0.00 135 2446 134 anti-conservative 0.95 0.00 62 1124 62
GSE85847 GSE85847_matrix_rnaseq_GEO_submission_jsantos20160817.txt.gz anti-conservative NA 0.66 NA NA NA anti-conservative 0.85 0.57 42 687 141
GSE86211 GSE86211_CmrA_transcriptome_Expression_of_all_genes.xlsx-sheet-PA14vsPJ01 anti-conservative NA 0.93 NA NA NA NA NA NA NA NA NA NA
GSE86211 GSE86211_CmrA_transcriptome_Expression_of_all_genes.xlsx-sheet-PJ01vsPJ01dT anti-conservative NA 0.96 NA NA NA NA NA NA NA NA NA NA
GSE87167 GSE87167_all_genes.txt.gz anti-conservative 0.91 0.38 1095 18841 2175 NA NA NA NA NA NA NA
GSE87365 GSE87365_gene_exp_diff_fc_yes_reg_Fetal_stem_cells_and_FACS_sort_vs_Fetal_stem_cells.xls.gz anti-conservative 0.95 0.00 192 3479 179 NA NA NA NA NA NA NA
GSE87365 GSE87365_gene_exp_diff_fc_yes_reg_Fetal_stem_cells_vs_Fetal_myotubes.xls.gz anti-conservative 0.95 0.00 124 2248 118 NA NA NA NA NA NA NA
GSE87398 GSE87398_gene_exp.diff.gz anti-conservative 0.97 0.83 30 548 15 NA NA NA NA NA NA NA
GSE87398 GSE87398_genes_group_exp.diff.gz anti-conservative 0.99 0.83 30 555 7 NA NA NA NA NA NA NA
GSE87448 GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-0 anti-conservative 0.90 0.04 89 1516 189 NA NA NA NA NA NA NA
GSE87448 GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-1 anti-conservative 0.97 0.02 97 1792 57 NA NA NA NA NA NA NA
GSE87448 GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-2 anti-conservative 0.97 0.02 97 1789 60 NA NA NA NA NA NA NA
GSE87448 GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-3 anti-conservative 0.98 0.03 97 1802 46 NA NA NA NA NA NA NA
GSE87448 GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-4 anti-conservative 0.90 0.04 89 1516 189 NA NA NA NA NA NA NA
GSE87448 GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-5 anti-conservative 0.97 0.02 97 1792 57 NA NA NA NA NA NA NA
GSE87448 GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-6 anti-conservative 0.97 0.02 97 1789 60 NA NA NA NA NA NA NA
GSE87448 GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-7 anti-conservative 0.98 0.03 97 1802 46 NA NA NA NA NA NA NA
GSE87448 GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-8 anti-conservative 0.90 0.04 89 1516 189 NA NA NA NA NA NA NA
GSE87448 GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-9 anti-conservative 0.97 0.02 97 1792 57 NA NA NA NA NA NA NA
GSE87448 GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-10 anti-conservative 0.97 0.02 97 1789 60 NA NA NA NA NA NA NA
GSE87448 GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-11 anti-conservative 0.98 0.03 97 1802 46 NA NA NA NA NA NA NA
GSE87448 GSE87448_AKT_vs_CTRL_at_2fold-p005-4433_genes.txt.gz-set-0 anti-conservative 0.74 0.07 159 2228 1082 NA NA NA NA NA NA NA
GSE87448 GSE87448_AKT_vs_CTRL_at_2fold-p005-4433_genes.txt.gz-set-1 anti-conservative 0.98 0.03 222 4131 81 NA NA NA NA NA NA NA
GSE87448 GSE87448_AKT_vs_CTRL_at_2fold-p005-4433_genes.txt.gz-set-2 anti-conservative 0.83 0.25 145 2282 578 NA NA NA NA NA NA NA
GSE87448 GSE87448_AKT_vs_CTRL_at_2fold-p005-4433_genes.txt.gz-set-3 anti-conservative 0.74 0.23 133 1882 877 NA NA NA NA NA NA NA
GSE87448 GSE87448_KRAS_vs_CTRL_at_2fold-p005-4238_genes.txt.gz-set-0 anti-conservative 0.71 0.08 145 1960 1131 NA NA NA NA NA NA NA
GSE87448 GSE87448_KRAS_vs_CTRL_at_2fold-p005-4238_genes.txt.gz-set-1 anti-conservative 0.77 0.15 147 2146 833 NA NA NA NA NA NA NA
GSE87448 GSE87448_KRAS_vs_CTRL_at_2fold-p005-4238_genes.txt.gz-set-2 anti-conservative 0.98 0.03 212 3948 79 NA NA NA NA NA NA NA
GSE87448 GSE87448_KRAS_vs_CTRL_at_2fold-p005-4238_genes.txt.gz-set-3 anti-conservative 0.71 0.22 124 1674 947 NA NA NA NA NA NA NA
GSE87448 GSE87448_MYC_vs_CTRL_at_2fold-p005-3502_genes_Myc_Only.txt.gz-set-0 anti-conservative 0.77 0.07 132 1937 751 NA NA NA NA NA NA NA
GSE87448 GSE87448_MYC_vs_CTRL_at_2fold-p005-3502_genes_Myc_Only.txt.gz-set-1 anti-conservative 0.98 0.03 175 3272 56 NA NA NA NA NA NA NA
GSE87495 GSE87495_results_dds_gencode22.csv.gz anti-conservative 0.88 0.34 516 8650 1306 anti-conservative 0.91 0.15 75 1298 145
GSE90013 GSE90013_cds_exp.diff_A_B_cds.txt.gz anti-conservative 0.98 0.03 139 2578 67 NA NA NA NA NA NA NA
GSE90013 GSE90013_gene_exp.diff_A_B_Gene.txt.gz anti-conservative 0.97 0.02 161 2977 84 NA NA NA NA NA NA NA
GSE90013 GSE90013_isoform_exp.diff_A_B_Isoform.txt.gz anti-conservative 0.98 0.03 146 2704 68 NA NA NA NA NA NA NA
GSE90013 GSE90013_tss_group_exp.diff_A_B_tss.txt.gz anti-conservative 0.97 0.03 156 2880 77 NA NA NA NA NA NA NA
GSE90478 GSE90478_Candidates_B_v_A_withNormData.csv.gz anti-conservative 0.95 0.00 117 2116 110 anti-conservative 0.95 0.00 67 1217 64
GSE90478 GSE90478_Candidates_D_v_B_withNormData_CL.csv.gz anti-conservative 0.95 0.00 177 3212 166 anti-conservative 0.95 0.00 78 1408 72
GSE90615 GSE90615_DifferentialExpression.xlsx-sheet-Vehicle_12dP-MI_vs_Pre-MI anti-conservative 0.76 0.48 320 4628 1895 NA NA NA NA NA NA NA
GSE90615 GSE90615_DifferentialExpression.xlsx-sheet-Sfrp2_12dP-MI_vs_Pre-MI anti-conservative 0.79 0.43 363 5469 1804 NA NA NA NA NA NA NA
GSE90615 GSE90615_DifferentialExpression.xlsx-sheet-1dP-MI_vs_Pre-MI anti-conservative 0.67 0.68 171 2177 1608 NA NA NA NA NA NA NA
GSE90977 GSE90977_RNA-seq_COMPLETE_4Con-4CJD_SETS_DEFINITIVE_log2FC_0.5.xlsx.gz-sheet-120 dpi anti-conservative 0.81 0.06 81 1247 352 anti-conservative 0.93 0.01 30 530 40
GSE90977 GSE90977_RNA-seq_COMPLETE_4Con-4CJD_SETS_DEFINITIVE_log2FC_0.5.xlsx.gz-sheet-180 dpi anti-conservative 0.69 0.10 72 953 603 anti-conservative 0.85 0.05 36 577 124
GSE90977 GSE90977_RNA_seq_COMPLETE_4_4_SETS_DEFINITIVE.xlsx.gz-sheet-120 dpi anti-conservative 0.80 0.54 307 4656 1476 anti-conservative 0.83 0.37 60 954 236
GSE90977 GSE90977_RNA_seq_COMPLETE_4_4_SETS_DEFINITIVE.xlsx.gz-sheet-180 dpi anti-conservative 0.83 0.82 129 2029 510 anti-conservative 0.89 0.83 19 325 47
GSE92282 GSE92282_Results.csv.gz anti-conservative 0.95 0.00 109 1972 103 NA NA NA NA NA NA NA
GSE92506 GSE92506_DEseq2_wholeTable.txt.gz anti-conservative 0.82 0.64 364 5645 1559 anti-conservative 0.81 0.42 50 767 217
GSE93684 GSE93684_S1-1A-vs-R1-1A.compare.txt.gz anti-conservative 0.88 0.30 2795 46676 7312 NA NA NA NA NA NA NA
GSE93827 GSE93827_LMP1_2a_vs_GFP.txt.gz anti-conservative 0.87 0.51 371 6118 1080 anti-conservative 0.89 0.27 64 1081 155
GSE93877 GSE93877_NB4_RNASeq_ATRA.txt.gz anti-conservative 0.90 0.84 97 1659 194 anti-conservative 0.83 0.75 28 447 110
GSE93877 GSE93877_NB4_RNASeq_DMSO.txt.gz anti-conservative NA 0.95 NA NA NA anti-conservative NA 0.93 NA NA NA
GSE94534 GSE94534_MSTR_gene-P005_FC1.2_FPKM2.txt.gz anti-conservative 0.97 0.02 171 3164 95 NA NA NA NA NA NA NA
GSE97174 GSE97174_DEseq_DifferentialGeneExpression.txt.gz anti-conservative 0.95 0.00 309 5599 286 NA NA NA NA NA NA NA
GSE97406 GSE97406_CRP_K100Q_vs_CRP_Control.csv.gz-set-0 anti-conservative 0.94 0.01 51 922 57 NA NA NA NA NA NA NA
GSE97406 GSE97406_CRP_K100R_vs_CRP_Control.csv.gz-set-0 anti-conservative 0.94 0.01 57 1016 66 NA NA NA NA NA NA NA
GSE97406 GSE97406_CRP_WT_vs_CRP_Control.csv.gz-set-0 anti-conservative 0.95 0.01 56 1015 53 NA NA NA NA NA NA NA
GSE98526 GSE98526_A12_vs_UA159T5.txt.gz anti-conservative 0.82 0.58 36 560 145 NA NA NA NA NA NA NA
GSE98526 GSE98526_A1_vs_UA159T5.txt.gz anti-conservative NA 0.80 NA NA NA NA NA NA NA NA NA NA
GSE98526 GSE98526_UA159T5_vs_UA159T0.txt.gz anti-conservative NA 0.93 NA NA NA NA NA NA NA NA NA NA
GSE99944 GSE99944_Digo_expression_results_significatif.xlsx-sheet-padj<=0.05 UP anti-conservative 0.95 0.00 214 3881 195 anti-conservative 0.95 0.00 93 1684 87
GSE99944 GSE99944_Digo_expression_results_significatif.xlsx-sheet-padj<=0.05 DOWN anti-conservative 0.95 0.00 204 3708 184 anti-conservative 0.95 0.00 57 1039 52
GSE99944 GSE99944_Digo_expression_results_significatif.xlsx-sheet-padj<=0.05 anti-conservative 0.95 0.00 418 7589 380 anti-conservative 0.95 0.00 89 1610 83
GSE99944 GSE99944_Digo_expression_results_significatif.xlsx-sheet-padj<=0.10 UP anti-conservative 0.95 0.01 235 4252 224 anti-conservative 0.95 0.01 95 1725 88
GSE99944 GSE99944_Digo_expression_results_significatif.xlsx-sheet-padj<=0.10 DOWN anti-conservative 0.96 0.01 227 4123 199 anti-conservative 0.96 0.01 59 1067 52
GSE99944 GSE99944_Digo_expression_results_significatif.xlsx-sheet-padj<=0.10 anti-conservative 0.95 0.01 462 8375 423 anti-conservative 0.95 0.01 87 1579 79
GSE35616 GSE35616_DESeq.txt.gz NA NA NA NA NA NA NA anti-conservative NA 0.87 NA NA NA
GSE36710 GSE36710_RBFOX1_Transcriptional_Events.txt.gz NA NA NA NA NA NA NA anti-conservative NA 1.00 NA NA NA
GSE40218 GSE40218_processed_DESeq.txt.gz NA NA NA NA NA NA NA anti-conservative 0.96 0.89 9 161 8
GSE41766 GSE41766_PRE1-Ox_IBH1-Ox_vs_IBH1-Ox.txt.gz NA NA NA NA NA NA NA anti-conservative 0.91 0.29 50 870 99
GSE44233 GSE44233_processed_data.txt.gz NA NA NA NA NA NA NA anti-conservative 0.64 0.72 18 221 198
GSE44333 GSE44333_d33_mock_vs_mhv_res_noNA.txt.gz NA NA NA NA NA NA NA anti-conservative NA 0.96 NA NA NA
GSE46046 GSE46046_GenesTable.txt.gz NA NA NA NA NA NA NA anti-conservative NA 0.93 NA NA NA
GSE46066 GSE46066_ICRFVsDMSO.txt.gz NA NA NA NA NA NA NA anti-conservative 0.67 0.79 20 256 191
GSE50198 GSE50198_Tet1kd_vs_v6.5_DESeq_results.txt.gz-set-0 NA NA NA NA NA NA NA anti-conservative 0.85 0.35 76 1229 266
GSE50198 GSE50198_Tet1kd_vs_v6.5_DESeq_results.txt.gz-set-1 NA NA NA NA NA NA NA anti-conservative 0.91 0.17 105 1801 208
GSE50198 GSE50198_Tet2kd_vs_v6.5_DESeq_results.txt.gz-set-0 NA NA NA NA NA NA NA anti-conservative 0.80 0.66 37 566 179
GSE50198 GSE50198_Tet2kd_vs_v6.5_DESeq_results.txt.gz-set-1 NA NA NA NA NA NA NA anti-conservative 0.86 0.31 81 1321 251
GSE54641 GSE54641_DESeq.txt.gz NA NA NA NA NA NA NA anti-conservative NA 0.98 NA NA NA
GSE56346 GSE56346_wtNplus_vs_wtNminus_DESeq_output.txt.gz NA NA NA NA NA NA NA anti-conservative 0.89 0.23 78 1319 192
GSE58865 GSE58865_Hyphae_vs_Oidia_DESeq_results.txt.gz NA NA NA NA NA NA NA anti-conservative 0.94 0.03 56 999 65
GSE58910 GSE58910_SenescentAstrocytesDEanalysis_v2.csv.gz NA NA NA NA NA NA NA anti-conservative 0.84 0.69 16 252 58
GSE59715 GSE59715_finalHiCRNAseqTable.csv.gz NA NA NA NA NA NA NA anti-conservative 0.62 0.44 43 506 512
GSE61031 GSE61031_DE_polyaWT_vs_polyaKO.txt.gz NA NA NA NA NA NA NA anti-conservative 0.90 0.84 19 323 41
GSE61033 GSE61033_DE_exonWT_vs_exonKOnoRN.txt.gz NA NA NA NA NA NA NA anti-conservative 0.80 0.71 32 490 158
GSE61033 GSE61033_DE_intronWT_vs_intronKOnoRN.txt.gz NA NA NA NA NA NA NA anti-conservative 0.99 0.86 20 384 5
GSE61336 GSE61336_results_167_vs_WTL.txt.gz NA NA NA NA NA NA NA anti-conservative 0.80 0.42 26 394 125
GSE61336 GSE61336_results_167_vs_WTZ.txt.gz NA NA NA NA NA NA NA anti-conservative 0.85 0.41 28 446 91
GSE61336 GSE61336_results_WTL_vs_WTZ.txt.gz NA NA NA NA NA NA NA anti-conservative NA 0.99 NA NA NA
GSE61954 GSE61954_all_genes_expression_values_supp_table.txt.gz NA NA NA NA NA NA NA anti-conservative 0.68 0.59 36 456 323
GSE63091 GSE63091_diffana_DESeq_GFP-4A3-Y14_MLN51-UPF1.Ensembl65.tsv.gz-set-0 NA NA NA NA NA NA NA anti-conservative NA 0.94 NA NA NA
GSE63091 GSE63091_diffana_DESeq_GFP-4A3-Y14_MLN51-UPF1.Ensembl65.tsv.gz-set-1 NA NA NA NA NA NA NA anti-conservative NA 0.99 NA NA NA
GSE63510 GSE63510_ko_vs_wt_fold_changes_p_values.txt.gz NA NA NA NA NA NA NA anti-conservative 0.87 0.29 65 1068 187
GSE63836 GSE63836_C15Dx_versus_Untr.DESeq.txt.gz NA NA NA NA NA NA NA anti-conservative 0.86 0.42 65 1066 194
GSE63836 GSE63836_Dx_versus_C15Dx.DESeq.txt.gz NA NA NA NA NA NA NA anti-conservative 0.89 0.83 20 342 48
GSE65328 GSE65328_A17_6V.tab.gz NA NA NA NA NA NA NA anti-conservative NA 0.92 NA NA NA
GSE65406 GSE65406_control_vs_gld1_DESeq.csv.gz NA NA NA NA NA NA NA anti-conservative NA 1.00 NA NA NA
GSE65406 GSE65406_youngadults_vs_gld1_DESeq.csv.gz NA NA NA NA NA NA NA anti-conservative NA 1.00 NA NA NA
GSE68998 GSE68998_DiffExpDeseq2_mdx2_NOut_3.6.14.csv.gz NA NA NA NA NA NA NA anti-conservative 0.80 0.47 31 473 151
GSE69311 GSE69311_deseq_diff_genes.csv.gz NA NA NA NA NA NA NA anti-conservative 0.68 0.79 9 121 83
GSE70141 GSE70141_Ax2_0H_1+2_ChdC_0H_1+2_DESeq.results.genenames.txt.gz NA NA NA NA NA NA NA anti-conservative 0.77 0.38 30 435 170
GSE70141 GSE70141_Ax2_0H_1_2_Ax2_10H_1_2_DESeq.results.genenames.txt.gz NA NA NA NA NA NA NA anti-conservative 0.94 0.06 75 1329 93
GSE70141 GSE70141_Ax2_10H_1_2_ChdC_12H_1_2_DESeq.results.genenames.txt.gz NA NA NA NA NA NA NA anti-conservative 0.91 0.15 81 1406 147
GSE70860 GSE70860_DEaxons.csv.gz NA NA NA NA NA NA NA anti-conservative 0.94 0.21 11 202 14
GSE72390 GSE72390_DiffExpr_Location_7-12_vs_1-6_Oncorhynchus_keta_de_novo.xlsx NA NA NA NA NA NA NA anti-conservative 0.93 0.79 13 238 19
GSE72860 GSE72860_RNA-seq_log2fdc.txt.gz NA NA NA NA NA NA NA anti-conservative 0.78 0.64 32 477 176
GSE74920 GSE74920_SupplementalTable1.xlsx.gz NA NA NA NA NA NA NA anti-conservative 0.86 0.33 58 942 186
GSE74920 GSE74920_SupplementalTable3.xlsx.gz NA NA NA NA NA NA NA anti-conservative 0.80 0.46 41 618 195
GSE74993 GSE74993_SupplementalTables.xlsx-sheet-Table S1 NA NA NA NA NA NA NA anti-conservative 0.86 0.33 58 942 186
GSE74993 GSE74993_SupplementalTables.xlsx-sheet-Table S3 NA NA NA NA NA NA NA anti-conservative 0.80 0.46 41 618 195
GSE75833 GSE75833_DESeq-processed_FB.control_vs_BR.txt.gz NA NA NA NA NA NA NA anti-conservative 0.92 0.14 40 707 64
GSE76257 GSE76257_O-VG_OGS2.csv.gz NA NA NA NA NA NA NA anti-conservative 0.87 0.21 29 476 79
GSE77351 GSE77351_Farshchian.txt.gz NA NA NA NA NA NA NA anti-conservative NA 0.89 NA NA NA
GSE77693 GSE77693_deseq.comparison.csv.gz NA NA NA NA NA NA NA anti-conservative NA 1.00 NA NA NA
GSE77901 GSE77901_SLNCR1_vs_vector.deseq.txt.gz NA NA NA NA NA NA NA anti-conservative 0.57 0.65 35 384 500
GSE77901 GSE77901_SLNCR1cons_vs_vector.deseq.txt.gz NA NA NA NA NA NA NA anti-conservative 0.60 0.92 9 104 115
GSE77901 GSE77901_SLNCR1deltacons_vs_vector.deseq.txt.gz NA NA NA NA NA NA NA anti-conservative 0.79 0.57 59 889 303
GSE77902 GSE77902_WM1976_siRNA1_vs_control.deseq.txt.gz NA NA NA NA NA NA NA anti-conservative 0.68 0.78 27 346 234
GSE78240 GSE78240_DESeq_Output.txt.gz NA NA NA NA NA NA NA anti-conservative 0.80 0.59 39 597 187
GSE78967 GSE78967_Deseq_Analysis.xlsx NA NA NA NA NA NA NA anti-conservative 0.81 0.38 57 872 250
GSE79633 GSE79633_DESeq2_out_FO_GFP_vs_WT.txt.gz NA NA NA NA NA NA NA anti-conservative 0.80 0.77 23 345 110
GSE79723 GSE79723_DEseq_LG1401-LG437-LG8736_LG1405-LG435-LG8737_DEG_list.csv.gz NA NA NA NA NA NA NA anti-conservative NA 0.89 NA NA NA
GSE79822 GSE79822_Deseq_totalRNA.txt.gz NA NA NA NA NA NA NA anti-conservative 0.78 0.46 10 149 53
GSE80128 GSE80128_P035_DESeq_KO-WT_pathway.txt.gz NA NA NA NA NA NA NA anti-conservative 0.73 0.80 12 165 83
GSE80135 GSE80135_Lipo_siProx_SC_results.csv.gz NA NA NA NA NA NA NA anti-conservative 0.75 0.82 14 193 89
GSE80135 GSE80135_Lipo_siProx_sig_results.csv.gz NA NA NA NA NA NA NA anti-conservative 0.75 0.73 20 286 129
GSE80135 GSE80135_siNeg_Lipo_results.csv.gz NA NA NA NA NA NA NA anti-conservative 0.74 0.77 18 256 119
GSE80135 GSE80135_siNeg_siProx_SC_results.csv.gz NA NA NA NA NA NA NA anti-conservative 0.74 0.78 17 233 111
GSE81059 GSE81059_cns-control_vs_head-control.csv.gz NA NA NA NA NA NA NA anti-conservative 0.92 0.13 76 1319 127
GSE81593 GSE81593_1.Mcf10A_p53delVec_and_p53delHras.xlsx NA NA NA NA NA NA NA anti-conservative 0.85 0.36 49 787 161
GSE81593 GSE81593_2.Mcf10A_Vec_and_Hras.xlsx NA NA NA NA NA NA NA anti-conservative 0.75 0.63 25 360 165
GSE81865 GSE81865_RNAseq_uninjured-14dpi.txt.gz NA NA NA NA NA NA NA anti-conservative 0.86 0.46 27 437 82
GSE83134 GSE83134_RYBPfl.DESeq2.Output.txt.gz-set-0 NA NA NA NA NA NA NA anti-conservative NA 0.99 NA NA NA
GSE83736 GSE83736_DESeq2.Vav.KO.C_vs_Vav.WT.C.txt.gz NA NA NA NA NA NA NA anti-conservative 0.85 0.30 62 1002 208
GSE83736 GSE83736_DESeq2.Vav.WTvsKO.StimulatedInteractions.txt.gz NA NA NA NA NA NA NA anti-conservative 0.89 0.32 64 1079 155
GSE85328 GSE85328_Leukaemia_MLL-AF9_RingKO.txt.gz NA NA NA NA NA NA NA anti-conservative 0.76 0.76 34 489 208
GSE85565 GSE85565_Result_Table.csv.gz NA NA NA NA NA NA NA anti-conservative 0.83 0.55 32 501 125
GSE85627 GSE85627_mDUX-mESC.xlsx.gz-sheet-Unsorted NA NA NA NA NA NA NA anti-conservative 0.92 0.16 78 1368 127
GSE85627 GSE85627_mDUX-mESC.xlsx.gz-sheet-Sorted NA NA NA NA NA NA NA anti-conservative 0.90 0.18 88 1521 177
GSE86521 GSE86521_DESeq_out_KO_vs_WT.txt.gz NA NA NA NA NA NA NA anti-conservative 0.88 0.74 30 503 75
GSE87706 GSE87706_SM_vs_RODI.txt.gz NA NA NA NA NA NA NA anti-conservative 0.91 0.13 37 642 73
GSE87808 GSE87808_diffExp_Slc7a5_Cerebellum_allGenes.txt.gz NA NA NA NA NA NA NA anti-conservative 0.75 0.83 14 196 84
GSE88970 GSE88970_Whsc1_proB_DE.xlsx-sheet-4P_05_WT_vs_KO_results NA NA NA NA NA NA NA anti-conservative NA 0.88 NA NA NA
GSE89004 GSE89004_ppGpp0_vs_H78_differential_all.xls.gz NA NA NA NA NA NA NA anti-conservative 0.90 0.21 38 650 80
GSE89238 GSE89238_SET2_KO_DESeq2_output.txt.gz NA NA NA NA NA NA NA anti-conservative 0.75 0.67 16 225 100
GSE89773 GSE89773_combined_expression_table.txt.gz-set-0 NA NA NA NA NA NA NA anti-conservative 0.91 0.21 64 1106 120
GSE89773 GSE89773_combined_expression_table.txt.gz-set-1 NA NA NA NA NA NA NA anti-conservative 0.87 0.26 57 938 164
GSE90889 GSE90889_geo_hiPSC-RPE_Vehicle_vs_NAM.xlsx NA NA NA NA NA NA NA anti-conservative 0.81 0.65 30 468 133
GSE93313 GSE93313_DESeq_2Dvs3D.txt.gz NA NA NA NA NA NA NA anti-conservative 0.81 0.42 66 1015 294
GSE93313 GSE93313_DESeq_2DvsTranswell.txt.gz NA NA NA NA NA NA NA anti-conservative 0.87 0.34 81 1345 224
GSE93313 GSE93313_DESeq_3DvsTranswell.txt.gz NA NA NA NA NA NA NA anti-conservative 0.81 0.55 52 796 238
GSE93547 GSE93547_LMvsWTM_cleaned_deseq2.csv.gz NA NA NA NA NA NA NA anti-conservative 0.87 0.32 39 644 116
GSE93748 GSE93748_shTAZ_in_DU145_proceeded_data.xlsx NA NA NA NA NA NA NA anti-conservative 0.89 0.91 10 175 26
GSE93870 GSE93870_processed_file.xlsx-sheet-293FT_ZIKV.Vs.293FT_Control.DES NA NA NA NA NA NA NA anti-conservative 0.81 0.88 13 206 58
GSE93870 GSE93870_processed_file.xlsx-sheet-BJ_ZIKV.Vs.BJ_Control.DESeq_Ana NA NA NA NA NA NA NA anti-conservative NA 0.96 NA NA NA
GSE93870 GSE93870_processed_file.xlsx-sheet-CHME_ZIKV.Vs.CHME_Control.DESeq NA NA NA NA NA NA NA anti-conservative 0.75 0.81 18 262 119
GSE93870 GSE93870_processed_file.xlsx-sheet-THP1_ZIKV.Vs.THP1_Control.DESeq NA NA NA NA NA NA NA anti-conservative 0.78 0.48 46 686 251
GSE94280 GSE94280_DESeq2_results_Y_vs_O.txt.gz NA NA NA NA NA NA NA anti-conservative 0.89 0.33 60 1020 143
GSE94512 GSE94512_NaPi_vs_Lys.txt.gz NA NA NA NA NA NA NA anti-conservative NA 0.98 NA NA NA
GSE94587 GSE94587_DESEQ_Female_WT_vs_Female_del.txt.gz NA NA NA NA NA NA NA anti-conservative 0.91 0.83 14 239 27
GSE94587 GSE94587_DESEQ_Male_WT_vs_Female_WT.txt.gz NA NA NA NA NA NA NA anti-conservative 0.87 0.60 32 522 90
GSE94587 GSE94587_DESEQ_Male_WT_vs_Male_del.txt.gz NA NA NA NA NA NA NA anti-conservative 0.95 0.80 18 321 17
GSE95337 GSE95337_DESeq_EH_Control.vs.dKO.res.txt.gz NA NA NA NA NA NA NA anti-conservative 0.87 0.38 72 1191 212
GSE96626 GSE96626_DE_TrtVsVeh.xlsx NA NA NA NA NA NA NA anti-conservative 0.93 0.87 14 242 20
GSE96999 GSE96999_DESeq2_miseq_output.txt.gz NA NA NA NA NA NA NA anti-conservative 0.89 0.23 56 937 137
GSE97395 GSE97395_Treat_vs_control_diff.txt.gz NA NA NA NA NA NA NA anti-conservative 0.78 0.60 36 542 194
GSE99944 GSE99944_Digo_expression_SD-T50nM_SD-Ctrl.csv.gz NA NA NA NA NA NA NA anti-conservative 0.86 0.34 55 888 174

Discussion

We need to dicuss some things here.

Reproducibility of ChIP-Seq results is poor and highly dependent on the software tools used (Steinhauser et al. 2016).

References

Dowle, Matt, and Arun Srinivasan. 2019. Data.table: Extension of ‘Data.frame‘. https://CRAN.R-project.org/package=data.table.

Steinhauser, S., N. Kurzawa, R. Eils, and C. Herrmann. 2016. “A comprehensive comparison of tools for differential ChIP-seq analysis.” Brief. Bioinformatics 17 (6): 953–66.

Temple Lang, Duncan, and the CRAN Team. 2019. XML: Tools for Parsing and Generating Xml Within R and S-Plus. https://CRAN.R-project.org/package=XML.

Wickham, Hadley, and Jennifer Bryan. 2018. Readxl: Read Excel Files. https://CRAN.R-project.org/package=readxl.

Wickham, Hadley, James Hester, and Jeroen Ooms. 2018. Xml2: Parse Xml. https://CRAN.R-project.org/package=xml2.